Commit Graph

9 Commits

Author SHA1 Message Date
jordan
1e5ba8b946 feat: wire auth bootstrap, cluster gateway, k8s deploy skill, and ops docs
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- Wire auth bootstrap (root API key, startup guard, auth-first router) in main.rs
- Add cluster gateway handlers with proper error handling
- Update Dockerfile with optimized multi-stage build and .dockerignore
- Add orchard9-deploy skill for CI/CD pipeline (Gitea/Woodpecker/Kaniko/Zot)
- Add k8s deployment roadmap and provision-project-keys script
- Document production infrastructure in CLAUDE.md
- Update three-node-cluster reference architecture
- Trim hosted.rs doc comments to stay under 800-line limit
2026-03-07 00:56:31 -07:00
jordan
4096967c20 fix: fix claims API scan prefix bug and add hosted Aphoria config
- stemedb_claims.rs: fix list/get/delete handlers using wrong scan key
  - Was scanning subject_index_key ({subject}\x00S:) which stores a
    single Vec<Hash> — scan_prefix finds nothing on a single key
  - Fix: use assertion_prefix ({subject}\x00H:*) to scan all assertions
  - GET /v1/claims was returning [] even after creating claims
- aphoria.toml: add [hosted] section pointing to local StemeDB (18180)
  - Enables aphoria scan --persist to push observations to StemeDB
- scripts/validate.sh: use release binary if available for fast startup
  - --no-build flag now actually skips all compilation (sub-3s startup)

Co-Authored-By: Claude Sonnet 4.6 <noreply@anthropic.com>
2026-02-23 15:12:44 -07:00
jordan
02ecac9a07 fix: merge upstream 10 commits, fix DashMap deadlock, deterministic sim ingestion
Merged 10 upstream commits (MemTable, read-your-writes tests, feed endpoint,
security hardening, signed assertions, source registry, dashboard enhancements)
and fixed all test failures across the full workspace (2656/2656 passing).

Key fixes:
- fix(cluster): DashMap deadlock in swim.rs suspect_node/fail_node/alive_node
  - DashMap::get_mut RefMut + iter() on same map = non-reentrant write lock deadlock
  - Fix: extract clone in scoped block to drop RefMut before calling update_node_gauges()
  - 6 previously-hanging SWIM tests now pass in <2s
- fix(sim): replace background-task+polling ingestion with synchronous process_pending()
  - smoke_high_volume_simulation was CPU-starved under 2656 parallel tests
  - Removed ingestor.start() + wait_until_ingested() pattern throughout sim
  - All arena functions now call ingestor.process_pending() directly (deterministic)
- fix(test): v2 signature helper used wrong hash (rkyv vs canonical compute_content_hash_v2)
- fix(test): quota test signed "test" but v1 requires "subject:predicate" format
- fix(test): http_validation now accepts 400 for valid-format-but-invalid-crypto hex
- fix(test): scale_adaptive micro tier assertions updated (auto_promote upstream change)
- config: add nextest.toml with slow-timeout for background-task-tests group

Co-Authored-By: Claude Sonnet 4.6 <noreply@anthropic.com>
2026-02-20 20:27:32 -07:00
jml
3e7eddc074 feat: add enterprise production readiness infrastructure
This commit implements comprehensive production hardening across multiple
layers to prepare StemeDB for enterprise pilot deployments:

## API Layer
- Add rate limiting middleware with configurable limits per endpoint
- Enhance error handling with detailed context and proper HTTP status codes
- Add security hardening tests for input validation and boundary conditions
- Create store_helpers module for defensive storage access patterns

## Storage & WAL
- Optimize group commit batching for higher throughput
- Add defensive error handling in hybrid backend with proper fallbacks
- Enhance WAL journal durability guarantees with fsync validation
- Improve index store query performance with better caching

## Operations & Deployment
- Add comprehensive operations documentation (deployment, monitoring, DR)
- Create systemd units for backup, WAL archival, and verification
- Add monitoring configs (Prometheus alerts, metrics exporters)
- Implement backup/restore scripts with verification and S3 archival
- Add DR drill automation and runbook procedures
- Create load balancer configs (nginx, envoy) with health checks

## Documentation
- Update CLAUDE.md with operations and troubleshooting guides
- Expand roadmap with production readiness milestones
- Add pilot success criteria and deployment reference architecture
- Document TLS setup, monitoring integration, and incident response

## Configuration
- Add .env.example with all required environment variables
- Document resource sizing for different deployment scales
- Add configuration examples for various deployment topologies

This positions StemeDB for successful enterprise pilots with proper
operational discipline, monitoring, backup/DR, and security hardening.

Co-Authored-By: Claude Sonnet 4.5 <noreply@anthropic.com>
2026-02-12 06:08:15 +00:00
jml
3b5f88b4f0 feat(aphoria): implement claims architecture (A1-A5) with verify engine, corpus, coverage, and explain
Complete Aphoria claims system overhaul:
- A1: Rename ExtractedClaim to Observation (extractors produce observations, not claims)
- A2: Add AuthoredClaim with full provenance, invariants, and authority tiers
- A3: Verify engine comparing observations against authored claims, CLI + formatters
- A4: Corpus as first-class assertions with predicate indexing, authority lens, trust packs
- A5: Coverage analysis, explain/docs generation, self-audit extractor, claim suggester skill

Also includes: 42 extractors updated for Observation type, verifiable_predicates trait,
conflict detection with comparison modes, claims TOML persistence, Grafana dashboard,
backup/restore scripts, and comprehensive test coverage.

Co-Authored-By: Claude Opus 4.6 <noreply@anthropic.com>
2026-02-08 09:11:47 +00:00
jordan
157dbbb9eb feat: Complete Aphoria Phase 8-9 + UAT suite (90/90 tests passing)
## Phase 8: Enterprise Extractor Improvements 
- 14 security extractors (TLS, JWT, SQL injection, XSS, etc.)
- 10 framework-specific extractors (Spring, Django, Rails, etc.)
- Config file security detection (YAML, TOML)

## Phase 9: Autonomous Extractor Generation 
- Shadow mode executor with TP/FP tracking
- Graduation pipeline with confidence thresholds
- Auto-rollback on regression detection
- Cross-project pattern syncing

## UAT Suite Complete (14 scripts, 90 tests)
- test-core-detection.sh (6 tests)
- test-declarative-extractors.sh (5 tests)
- test-domain-frameworks.sh (5 tests)
- test-domain-unreal.sh (3 tests)
- test-llm-extraction.sh (6 tests)
- test-eval-harness.sh (5 tests)
- test-cross-language.sh (3 tests)
- test-precommit-performance.sh (4 tests)
- test-output-formats.sh (8 tests)
- test-drift-detection.sh (6 tests)
- test-exit-codes.sh (12 tests)
+ 3 more scripts

## Other Changes
- Updated roadmap to mark Phase 8-9 complete
- Added .gitignore entries for build artifacts
- Updated pre-commit: 800 line limit, exclude tests/data/cmd

Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com>
2026-02-06 22:50:55 -07:00
jordan
bbe6aedc40 feat: Aphoria security extractors + LLM evaluation architecture + ontology docs
New security extractors:
- insecure_deserialization, orm_injection, path_traversal, security_headers
- ssrf, unvalidated_redirects, weak_password, xxe
- Enhanced tls_version extractor with comprehensive cipher/protocol checks

Architecture docs:
- Scout-judge extraction pattern for LLM-based code analysis
- LLM prompt evaluation framework
- LLM eval implementation guide

Core improvements:
- stemedb-ontology README and client enhancements
- WAL journal/segment instrumentation
- Signing and ingestion refinements
- Consumer health demo script

Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com>
2026-02-05 15:22:55 -07:00
jordan
b3e8a9a058 feat: Multi-application expansion with chaos testing and community UI
Major additions:
- Community Next.js app (port 18187) for browsing claims with API docs
- stemedb-chaos crate: Fault injection, chaos testing, CRDT properties
- Latent ingestion system: Reddit/FDA ingesters with ADK-Go agents
- Disputed claims handling: Manual review workflows and validation
- Aphoria security scanner: New extractors (SQL injection, command
  injection, weak crypto, TLS version), policy-based ignores, UAT reports
- Docker infrastructure: Dockerfile, docker-compose.yml for full stack
- VulnBank demo: Intentionally vulnerable multi-language test corpus

SDK & API enhancements:
- Source registry handlers for tracking data provenance
- Metrics endpoint
- Skeptic filtering improvements

Code quality:
- Split 14 large files (>500 lines) into focused modules
- All files now under 500-line limit per project guidelines

Documentation:
- Chaos testing guide, circuit breakers, observability docs
- Phase 7 UAT documentation updates
- Martin Kleppmann technical writer agent

Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com>
2026-02-04 01:24:14 -07:00
jordan
c59066949a feat: Add quickstart "Beyond Hello World" sections with Skeptic and Layered endpoints
- Add Layered() method to Go SDK for per-source-class consensus queries
- Add LayeredQueryParams, LayeredResult, TierResolution types to Go SDK
- Create conflict example demonstrating Skeptic and Layered endpoints
- Update quickstart.md with sections 6 (conflict detection) and 7 (authority tiers)
- Remove tracked Go binary and add data/ to .gitignore

The new quickstart sections demonstrate Episteme's differentiating features:
- Skeptic endpoint shows "Trust but Verify" conflict analysis
- Layered endpoint shows per-tier resolution (Clinical vs Anecdotal)

Note: Pre-existing large files flagged by pre-commit hook (technical debt from prior sessions)

Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com>
2026-02-01 21:00:59 -07:00