Add Language::C variant with file detection (.c, Makefile, CMakeLists.txt)
and integration across prompts, regex_gen, and path_mapper. Simplify
README and guides to be more concise and scannable.
Co-Authored-By: Claude Opus 4.6 <noreply@anthropic.com>
**Git Commit Tracking**
- Automatically capture git commit hash when claims/observations are ingested
- Store in assertion metadata for temporal context and audit trails
- Graceful degradation in non-git environments
- Solves double-commit problem by capturing hash at ingestion time
**Implementation**
- walker/git.rs: get_current_commit_hash() utility function
- bridge.rs: Accept optional git_commit parameter in all conversion functions
- episteme/local: Store project_root, capture git hash during ingestion
- 5 new tests for git hash tracking + metadata validation
- All 1162 aphoria tests passing
**Documentation Overhaul**
- README: Added Observations vs Claims distinction, git tracking, dashboard
- CLI Reference: New sections for git integration and ignore/exclusion system
- Comprehensive ignore documentation: .aphoriaignore, inline comments, 4 methods
- Enhanced verification engine docs with matching capabilities
- DOCUMENTATION_UPDATES.md: Complete audit summary
**Dashboard Separation**
- Moved Aphoria-specific UI from stemedb-dashboard to aphoria-dashboard
- Clean separation of concerns: StemeDB for core, Aphoria for security
- Added dashboard documentation and setup guides
Co-Authored-By: Claude Sonnet 4.5 <noreply@anthropic.com>
Major additions:
- Staged scanning modes (working tree, staged, committed) with git integration
- Drift detection for baseline vs current state comparisons
- Hosted API handlers for policy CRUD operations via StemeDB API
- stemedb-ontology crate with domain definitions and medical extractors
- Consumer health vertical UAT scenarios (GLP-1, gastroparesis, etc.)
- Aphoria development skill documentation
Code organization:
- Split large files into focused modules to stay under 500-line limit
- Extracted config tests, episteme helpers/drift/aliases, API helpers
Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com>
- Add Hybrid Logical Clock (HLC) for causality tracking across nodes
- Implement Merkle tree for efficient diff/sync with BLAKE3 hashing
- Add CRDT-aware stores for assertions and votes with vector clocks
- Create stemedb-sync crate with anti-entropy and gossip protocols
- Add stemedb-rpc crate with gRPC sync service (proto definitions)
- Implement SupersessionChain for tracking assertion lifecycles
- Add Aphoria application for code analysis/reporting
- Add battery11 replication test scaffolding
- Fix .gitignore to exclude nested target directories
Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com>
