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6 Commits

Author SHA1 Message Date
jordan
422e2d4416 feat(aphoria): wire claims through StemeDB — Gap Closure Phase 1 
Claims now flow through StemeDB's append-only knowledge graph instead of
mutable TOML files. This resolves all 6 critical claim-bypass code paths:

- Bridge: lossless AuthoredClaim ↔ Assertion round-trip (comparison, status, lifecycle mapping)
- LocalEpisteme: ingest_authored_claim() and fetch_authored_claims() with AUTHORED_CLAIM predicate index
- EpistemeClaimStore: ClaimStore trait backed by StemeDB (append-only delete via deprecation)
- CLI handlers: all claim commands read/write through StemeDB
- Scanner: loads claims from StemeDB with auto-migration fallback to TOML
- Export: new `aphoria claims export` serializes StemeDB claims to TOML/JSON

Also cleans up dead code (EpistemeConfig.url), renames ingest_claims→ingest_observations,
fixes ClaimFilter.authority_tier type, adds Draft variant to ClaimStatus, and fixes
pre-existing clippy warnings (too_many_arguments, filter_next→rfind).

Co-Authored-By: Claude Opus 4.6 <noreply@anthropic.com>
 2026-02-12 02:02:51 -07:00
jordan
8af9b48ac7 feat: Complete Aphoria Phase 14 - Governance Workflows 
Implement structured approval workflows for pattern promotion with full
audit trails for SOC 2 compliance.

Core Components:
- governance/types.rs: ApprovalRequest, ApprovalStatus, ApprovalDecision
- governance/workflow.rs: ApprovalWorkflow, ApprovalStage with escalation
- governance/store.rs: JSONL persistence for requests and decisions
- governance/state_machine.rs: Approval state transitions with auto-advance
- governance/audit.rs: AuditTrail with JSON/CSV/Markdown export

CLI Commands:
- aphoria governance pending/approve/reject/escalate/status/create
- aphoria audit trail/export/summary

Integration:
- Pipeline gate blocks promotion until governance approval
- Auto-creates approval requests when governance enabled
- Evidence-based auto-approval for high-confidence patterns

Also includes:
- Phase 11-13: Evidence, Lifecycle, Scope modules
- 62+ governance-specific tests (946 total passing)
- Clippy clean with -D warnings
- Refactored cli.rs into submodules (governance, lifecycle, scope, etc.)

Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com>
 2026-02-07 05:16:26 -07:00
jordan
55349845d0 refactor: Split all files to enforce 500-line max 
Break monolith source files into focused modules:
- stemedb-core/types.rs → types/ directory (assertion, source, gold_standard, etc.)
- stemedb-storage: audit_store, quota_store, trust_rank_store, vector_index, vote_store → module directories
- stemedb-ingest/worker.rs → worker/ with separate test modules
- stemedb-query: engine, materializer, query → module directories
- stemedb-lens: epoch_aware, skeptic → module directories
- stemedb-sim/lib.rs → agent, arenas/, helpers, runner, strategy, types
- stemedb-api/tests: integration_tests → http_basic, http_validation, http_epoch, http_pipeline
- stemedb-api/tests: e2e_flow_test → e2e_full_pipeline, e2e_lens_resolution
- stemedb-query/tests: e2e_pipeline → e2e_pipeline + e2e_decay

Also adds new features: gold standard verification, escalation handlers,
admin endpoints, concept hierarchy spec, arena roadmap, and Go SDK.

Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com>
 2026-02-02 01:13:45 -07:00
jordan
1ce4004807 feat: Complete Phase 2 (The Cortex) - query, lens, and API layers 
This commit adds the read path (Cortex) to complement the write path (Spine):

## Crates
- stemedb-api: HTTP API with axum + utoipa OpenAPI
  - /v1/assert, /v1/query, /v1/epoch, /v1/skeptic, /v1/trace, /v1/audit
  - Metered endpoints with quota enforcement
  - Ed25519 signature verification
- stemedb-lens: Truth resolution lenses
  - RecencyLens, ConsensusLens, ConfidenceLens
  - VoteAwareConsensusLens (Ballot Box pattern)
  - TrustAwareAuthorityLens (The Hive pattern)
  - SkepticLens (conflict analysis)
  - EpochAwareLens (paradigm-safe queries)
- stemedb-query: Query engine with materialized views

## Storage Extensions
- VoteStore: Vote aggregation with cached counts
- TrustRankStore: Agent reputation with decay
- AuditStore: Query audit trail
- IndexStore: SP/P/S index structures
- SupersessionStore: Epoch supersession chains

## SDKs
- sdk/go/steme: Go HTTP client with Ed25519 signing
- sdk/go/adk: ADK-Go tools for AI agents

## Documentation
- Updated CLAUDE.md, architecture.md, roadmap.md
- New ai-lookup entries for all services
- Use case docs for consumer health intelligence
- Arena roadmap for simulation advancement

Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com>
 2026-02-01 13:22:44 -07:00
jordan
3cfaa1e1d3 feat: Complete Phase 1 (The Spine) - storage foundation 
Phase 1 delivers the complete durability and storage layer:

- WAL with crash recovery: Append-only journal with BLAKE3 checksums,
  fsync guarantees, and proper seek-to-EOF on reopen
- Storage engine: sled-backed KVStore with scan_prefix for range queries
- Content-addressed storage: H:{hash}, V:{hash}, E:{hash} key patterns
- Ingestor: Background worker tailing WAL, writing to KV with 8-byte
  aligned record headers for rkyv zero-copy deserialization
- Comprehensive tests: 31 tests covering crash recovery, round-trips,
  and multi-cycle durability

New crates: stemedb-wal, stemedb-storage, stemedb-ingest

Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com>
 2026-01-31 14:15:34 -07:00
jordan
a776744889 Initial project setup with Claude Code monorepo structure 
- Rust workspace with stemedb-core crate
- Full .claude/ configuration (agents, skills, commands, guides)
- ai-lookup/ for token-efficient fact storage
- Quality gates: clippy, fmt, jscpd duplication detection
- Pre-commit hook with 5-phase quality checks
- CLAUDE.md router and CODING_GUIDELINES.md standards

Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com>
 2026-01-31 10:56:26 -07:00