Commit Graph

6 Commits

Author SHA1 Message Date
jml
9bfa626203 docs: reorganize documentation structure for clarity
Major documentation restructure to improve discoverability and reduce duplication.

## Changes

**Deleted (Archived/Consolidated)**:
- Removed duplicate getting started guides
- Archived outdated planning documents
- Consolidated corpus and configuration docs
- Removed obsolete vision/spec files (superseded by vision.md)
- Cleaned up scrapyard and old PDFs

**New Structure**:
- docs/about/ - Project overview and introduction
- docs/guides/ - User guides (moved from root)
- docs/specs/ - Technical specifications
- docs/sdk/ - SDK documentation (Go)
- docs/references/ - API references
- docs/archive/ - Archived historical docs
- applications/aphoria/docs/advanced/ - Advanced topics
- applications/aphoria/docs/reference/ - CLI reference
- applications/aphoria/docs/archive/ - Archived aphoria docs

**Updated**:
- README.md - New root README with clear navigation
- CONTRIBUTING.md - Contribution guidelines
- CLAUDE.md - Updated paths to new structure
- roadmap.md - Added recent completions

## Files Changed
- 57 files changed
- 1,977 insertions(+)
- 961 deletions(-)

**Net change**: +1,016 lines (added CONTRIBUTING.md, README.md, reorganized content)

Co-Authored-By: Claude Sonnet 4.5 <noreply@anthropic.com>
2026-02-11 07:33:40 +00:00
jml
bb0c33f8d3 fix(api): enable querying of CLI-created community corpus items
## Problem
CLI-created community corpus items (tier 3) were stored correctly but
invisible via API queries. Two issues blocked discoverability:

1. **Prefix mismatch**: API hardcoded 'community://pattern/' for
   aggregated patterns, but CLI creates 'community://rust/http/...' URIs
2. **Query parameter parsing**: Axum's default parser doesn't support
   bracket notation (?sources[]=value) used by the dashboard

Result: 0/22 CLI-created items were queryable.

## Solution

### Fix 1: Broaden Community Prefix
- Changed: 'community://pattern/' → 'community://' in corpus handler
- Impact: Now matches both aggregated patterns AND CLI-created items
- Backward compatible: Broader prefix includes narrower results

### Fix 2: Add QsQuery Extractor
- Added: serde_qs dependency + custom QsQuery extractor
- Supports: Bracket notation for array parameters (?sources[]=a&sources[]=b)
- Compatible: Works with JavaScript URLSearchParams standard
- Tested: 3 new unit tests for extractor behavior

## Verification
-  All 22 CLI-created community items now queryable (was 0)
-  Source filtering works: community (22), RFC (2), vendor (5)
-  Multi-source queries work: ?sources[]=community&sources[]=rfc → 24
-  All 89 API tests pass + 3 new extractor tests
-  Clippy clean (0 warnings)
-  No regressions in existing functionality

## Files Changed
- crates/stemedb-api/Cargo.toml: Add serde_qs dependency
- crates/stemedb-api/src/extractors.rs: New QsQuery extractor (117 lines)
- crates/stemedb-api/src/handlers/aphoria/corpus.rs: Use QsQuery, broaden prefix
- crates/stemedb-api/src/lib.rs: Export extractors module

Also includes: Scale-adaptive thresholds, wiki corpus extraction,
documentation updates, and dashboard UI improvements from prior work.

Co-Authored-By: Claude Sonnet 4.5 <noreply@anthropic.com>
2026-02-09 15:54:35 +00:00
jordan
d3a88585fe feat: Phase 6 UAT - Admission control, HLC recency, cluster coordination
This commit includes comprehensive work on Phase 6 features:

## Admission Control (Phase 6 admission middleware)
- AdmissionStore implementation backed by TrustRankStore
- PoW verification with tier-based difficulty computation
- Trust tier progression (Newcomer → Established → Trusted → Authority)
- API integration with admission status endpoints

## HLC Recency Lens (Phase 6C)
- HlcRecencyLens for distributed system ordering
- Hybrid logical clock integration with causality preservation

## Cluster Coordination (Phase 6C)
- Multi-node cluster tests (availability, partition tolerance)
- CRDT convergence tests for anti-entropy sync
- Gateway handler improvements

## Aphoria Code Linter (Phase 2A)
- RFC/OWASP corpus builders with network fetching and caching
- Concept hierarchy with auto-alias creation on conflict detection
- Multiple security extractors (TLS, JWT, CORS, secrets, rate limiting)

## Code Organization
- Split large files into modules to comply with 500-line limit
- Improved test organization with separate test modules
- Fixed rkyv serialization for EigenTrustState (AgentScore struct)

Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com>
2026-02-03 00:43:37 -07:00
jordan
c59066949a feat: Add quickstart "Beyond Hello World" sections with Skeptic and Layered endpoints
- Add Layered() method to Go SDK for per-source-class consensus queries
- Add LayeredQueryParams, LayeredResult, TierResolution types to Go SDK
- Create conflict example demonstrating Skeptic and Layered endpoints
- Update quickstart.md with sections 6 (conflict detection) and 7 (authority tiers)
- Remove tracked Go binary and add data/ to .gitignore

The new quickstart sections demonstrate Episteme's differentiating features:
- Skeptic endpoint shows "Trust but Verify" conflict analysis
- Layered endpoint shows per-tier resolution (Clinical vs Anecdotal)

Note: Pre-existing large files flagged by pre-commit hook (technical debt from prior sessions)

Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com>
2026-02-01 21:00:59 -07:00
jordan
3cfaa1e1d3 feat: Complete Phase 1 (The Spine) - storage foundation
Phase 1 delivers the complete durability and storage layer:

- WAL with crash recovery: Append-only journal with BLAKE3 checksums,
  fsync guarantees, and proper seek-to-EOF on reopen
- Storage engine: sled-backed KVStore with scan_prefix for range queries
- Content-addressed storage: H:{hash}, V:{hash}, E:{hash} key patterns
- Ingestor: Background worker tailing WAL, writing to KV with 8-byte
  aligned record headers for rkyv zero-copy deserialization
- Comprehensive tests: 31 tests covering crash recovery, round-trips,
  and multi-cycle durability

New crates: stemedb-wal, stemedb-storage, stemedb-ingest

Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com>
2026-01-31 14:15:34 -07:00
jordan
a776744889 Initial project setup with Claude Code monorepo structure
- Rust workspace with stemedb-core crate
- Full .claude/ configuration (agents, skills, commands, guides)
- ai-lookup/ for token-efficient fact storage
- Quality gates: clippy, fmt, jscpd duplication detection
- Pre-commit hook with 5-phase quality checks
- CLAUDE.md router and CODING_GUIDELINES.md standards

Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com>
2026-01-31 10:56:26 -07:00