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8f6506b70a
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4 Commits

Author SHA1 Message Date
jordan
8f6506b70a feat: Aphoria scan modes + stemedb-ontology crate + consumer health UAT 
Major additions:
- Staged scanning modes (working tree, staged, committed) with git integration
- Drift detection for baseline vs current state comparisons
- Hosted API handlers for policy CRUD operations via StemeDB API
- stemedb-ontology crate with domain definitions and medical extractors
- Consumer health vertical UAT scenarios (GLP-1, gastroparesis, etc.)
- Aphoria development skill documentation

Code organization:
- Split large files into focused modules to stay under 500-line limit
- Extracted config tests, episteme helpers/drift/aliases, API helpers

Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com>
 2026-02-04 21:57:33 -07:00
jordan
b3e8a9a058 feat: Multi-application expansion with chaos testing and community UI 
Major additions:
- Community Next.js app (port 18187) for browsing claims with API docs
- stemedb-chaos crate: Fault injection, chaos testing, CRDT properties
- Latent ingestion system: Reddit/FDA ingesters with ADK-Go agents
- Disputed claims handling: Manual review workflows and validation
- Aphoria security scanner: New extractors (SQL injection, command
  injection, weak crypto, TLS version), policy-based ignores, UAT reports
- Docker infrastructure: Dockerfile, docker-compose.yml for full stack
- VulnBank demo: Intentionally vulnerable multi-language test corpus

SDK & API enhancements:
- Source registry handlers for tracking data provenance
- Metrics endpoint
- Skeptic filtering improvements

Code quality:
- Split 14 large files (>500 lines) into focused modules
- All files now under 500-line limit per project guidelines

Documentation:
- Chaos testing guide, circuit breakers, observability docs
- Phase 7 UAT documentation updates
- Martin Kleppmann technical writer agent

Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com>
 2026-02-04 01:24:14 -07:00
jordan
d3a88585fe feat: Phase 6 UAT - Admission control, HLC recency, cluster coordination 
This commit includes comprehensive work on Phase 6 features:

## Admission Control (Phase 6 admission middleware)
- AdmissionStore implementation backed by TrustRankStore
- PoW verification with tier-based difficulty computation
- Trust tier progression (Newcomer → Established → Trusted → Authority)
- API integration with admission status endpoints

## HLC Recency Lens (Phase 6C)
- HlcRecencyLens for distributed system ordering
- Hybrid logical clock integration with causality preservation

## Cluster Coordination (Phase 6C)
- Multi-node cluster tests (availability, partition tolerance)
- CRDT convergence tests for anti-entropy sync
- Gateway handler improvements

## Aphoria Code Linter (Phase 2A)
- RFC/OWASP corpus builders with network fetching and caching
- Concept hierarchy with auto-alias creation on conflict detection
- Multiple security extractors (TLS, JWT, CORS, secrets, rate limiting)

## Code Organization
- Split large files into modules to comply with 500-line limit
- Improved test organization with separate test modules
- Fixed rkyv serialization for EigenTrustState (AgentScore struct)

Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com>
 2026-02-03 00:43:37 -07:00
jordan
2b0923f20e feat: Distributed replication foundation (Phase 6A) - HLC, Merkle trees, CRDT stores, sync protocol 
- Add Hybrid Logical Clock (HLC) for causality tracking across nodes
- Implement Merkle tree for efficient diff/sync with BLAKE3 hashing
- Add CRDT-aware stores for assertions and votes with vector clocks
- Create stemedb-sync crate with anti-entropy and gossip protocols
- Add stemedb-rpc crate with gRPC sync service (proto definitions)
- Implement SupersessionChain for tracking assertion lifecycles
- Add Aphoria application for code analysis/reporting
- Add battery11 replication test scaffolding
- Fix .gitignore to exclude nested target directories

Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com>
 2026-02-02 19:31:54 -07:00