stemedb

jordan/stemedb

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Author	SHA1	Message	Date
jordan	422e2d4416	feat(aphoria): wire claims through StemeDB — Gap Closure Phase 1 Claims now flow through StemeDB's append-only knowledge graph instead of mutable TOML files. This resolves all 6 critical claim-bypass code paths: - Bridge: lossless AuthoredClaim ↔ Assertion round-trip (comparison, status, lifecycle mapping) - LocalEpisteme: ingest_authored_claim() and fetch_authored_claims() with AUTHORED_CLAIM predicate index - EpistemeClaimStore: ClaimStore trait backed by StemeDB (append-only delete via deprecation) - CLI handlers: all claim commands read/write through StemeDB - Scanner: loads claims from StemeDB with auto-migration fallback to TOML - Export: new `aphoria claims export` serializes StemeDB claims to TOML/JSON Also cleans up dead code (EpistemeConfig.url), renames ingest_claims→ingest_observations, fixes ClaimFilter.authority_tier type, adds Draft variant to ClaimStatus, and fixes pre-existing clippy warnings (too_many_arguments, filter_next→rfind). Co-Authored-By: Claude Opus 4.6 <noreply@anthropic.com>	2026-02-12 02:02:51 -07:00
jordan	3320c24afa	feat: WAL hardening (Phase 5B) - CRC32C, crash recovery, group commit, log rotation Add CRC32C checksums to WAL record format (v2), implement crash recovery with automatic truncation of corrupt records, add feature-gated group commit buffer for batched fsync under concurrent load, and implement log rotation via segment files with global offset addressing. Key changes: - Record format v2: [len:u32][crc32c:u32][blake3:32][payload:N] - recover_file() scans and truncates corrupt tail records - GroupCommitBuffer batches fsync via MPSC channel (tokio feature gate) - SegmentManager with binary search resolution and cursor-based cleanup - Journal::read() auto-refreshes segments on miss for writer/reader split - Split recovery.rs and key_codec.rs into directory modules for 500-line max Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com>	2026-02-02 12:36:35 -07:00
jordan	55349845d0	refactor: Split all files to enforce 500-line max Break monolith source files into focused modules: - stemedb-core/types.rs → types/ directory (assertion, source, gold_standard, etc.) - stemedb-storage: audit_store, quota_store, trust_rank_store, vector_index, vote_store → module directories - stemedb-ingest/worker.rs → worker/ with separate test modules - stemedb-query: engine, materializer, query → module directories - stemedb-lens: epoch_aware, skeptic → module directories - stemedb-sim/lib.rs → agent, arenas/, helpers, runner, strategy, types - stemedb-api/tests: integration_tests → http_basic, http_validation, http_epoch, http_pipeline - stemedb-api/tests: e2e_flow_test → e2e_full_pipeline, e2e_lens_resolution - stemedb-query/tests: e2e_pipeline → e2e_pipeline + e2e_decay Also adds new features: gold standard verification, escalation handlers, admin endpoints, concept hierarchy spec, arena roadmap, and Go SDK. Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com>	2026-02-02 01:13:45 -07:00

Author

SHA1

Message

Date

jordan

422e2d4416

feat(aphoria): wire claims through StemeDB — Gap Closure Phase 1

Claims now flow through StemeDB's append-only knowledge graph instead of
mutable TOML files. This resolves all 6 critical claim-bypass code paths:

- Bridge: lossless AuthoredClaim ↔ Assertion round-trip (comparison, status, lifecycle mapping)
- LocalEpisteme: ingest_authored_claim() and fetch_authored_claims() with AUTHORED_CLAIM predicate index
- EpistemeClaimStore: ClaimStore trait backed by StemeDB (append-only delete via deprecation)
- CLI handlers: all claim commands read/write through StemeDB
- Scanner: loads claims from StemeDB with auto-migration fallback to TOML
- Export: new `aphoria claims export` serializes StemeDB claims to TOML/JSON

Also cleans up dead code (EpistemeConfig.url), renames ingest_claims→ingest_observations,
fixes ClaimFilter.authority_tier type, adds Draft variant to ClaimStatus, and fixes
pre-existing clippy warnings (too_many_arguments, filter_next→rfind).

Co-Authored-By: Claude Opus 4.6 <noreply@anthropic.com>

2026-02-12 02:02:51 -07:00

jordan

3320c24afa

feat: WAL hardening (Phase 5B) - CRC32C, crash recovery, group commit, log rotation

Add CRC32C checksums to WAL record format (v2), implement crash recovery
with automatic truncation of corrupt records, add feature-gated group commit
buffer for batched fsync under concurrent load, and implement log rotation
via segment files with global offset addressing.

Key changes:
- Record format v2: [len:u32][crc32c:u32][blake3:32][payload:N]
- recover_file() scans and truncates corrupt tail records
- GroupCommitBuffer batches fsync via MPSC channel (tokio feature gate)
- SegmentManager with binary search resolution and cursor-based cleanup
- Journal::read() auto-refreshes segments on miss for writer/reader split
- Split recovery.rs and key_codec.rs into directory modules for 500-line max

Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com>

2026-02-02 12:36:35 -07:00

jordan

55349845d0

refactor: Split all files to enforce 500-line max

Break monolith source files into focused modules:
- stemedb-core/types.rs → types/ directory (assertion, source, gold_standard, etc.)
- stemedb-storage: audit_store, quota_store, trust_rank_store, vector_index, vote_store → module directories
- stemedb-ingest/worker.rs → worker/ with separate test modules
- stemedb-query: engine, materializer, query → module directories
- stemedb-lens: epoch_aware, skeptic → module directories
- stemedb-sim/lib.rs → agent, arenas/, helpers, runner, strategy, types
- stemedb-api/tests: integration_tests → http_basic, http_validation, http_epoch, http_pipeline
- stemedb-api/tests: e2e_flow_test → e2e_full_pipeline, e2e_lens_resolution
- stemedb-query/tests: e2e_pipeline → e2e_pipeline + e2e_decay

Also adds new features: gold standard verification, escalation handlers,
admin endpoints, concept hierarchy spec, arena roadmap, and Go SDK.

Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com>

2026-02-02 01:13:45 -07:00

3 Commits