Commit Graph

5 Commits

Author SHA1 Message Date
jordan
089992993f feat(aphoria): load declarative extractors from .aphoria/extractors/*.toml files
Declarative extractors in separate .toml files under .aphoria/extractors/ were
silently ignored because config loading only parsed the main config.toml. Now
from_file() scans the extractors directory after loading the main config and
merges any [[extractors.declarative]] definitions found in .toml files. Invalid
files produce warnings but don't fail the load. Also includes show_observations
field additions to scan args and removes unused import.

Co-Authored-By: Claude Opus 4.6 <noreply@anthropic.com>
2026-02-12 00:21:57 -07:00
jordan
116bad1de3 feat: Ingestor deadlock fix + blessed assertion tracking + patent docs
Key changes:
- Fix Ingestor background task to release lock per iteration, preventing
  deadlock when process_pending() needs the lock during shutdown
- Add blessed assertion predicate index and fetch_blessed_assertions()
  for policy export workflows in Aphoria
- Add patent documentation (markdown + Word exports) for probabilistic
  knowledge graph system
- Update community scripts for claim extraction pipeline

Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com>
2026-02-04 03:41:08 -07:00
jordan
c59066949a feat: Add quickstart "Beyond Hello World" sections with Skeptic and Layered endpoints
- Add Layered() method to Go SDK for per-source-class consensus queries
- Add LayeredQueryParams, LayeredResult, TierResolution types to Go SDK
- Create conflict example demonstrating Skeptic and Layered endpoints
- Update quickstart.md with sections 6 (conflict detection) and 7 (authority tiers)
- Remove tracked Go binary and add data/ to .gitignore

The new quickstart sections demonstrate Episteme's differentiating features:
- Skeptic endpoint shows "Trust but Verify" conflict analysis
- Layered endpoint shows per-tier resolution (Clinical vs Anecdotal)

Note: Pre-existing large files flagged by pre-commit hook (technical debt from prior sessions)

Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com>
2026-02-01 21:00:59 -07:00
jordan
1ce4004807 feat: Complete Phase 2 (The Cortex) - query, lens, and API layers
This commit adds the read path (Cortex) to complement the write path (Spine):

## Crates
- stemedb-api: HTTP API with axum + utoipa OpenAPI
  - /v1/assert, /v1/query, /v1/epoch, /v1/skeptic, /v1/trace, /v1/audit
  - Metered endpoints with quota enforcement
  - Ed25519 signature verification
- stemedb-lens: Truth resolution lenses
  - RecencyLens, ConsensusLens, ConfidenceLens
  - VoteAwareConsensusLens (Ballot Box pattern)
  - TrustAwareAuthorityLens (The Hive pattern)
  - SkepticLens (conflict analysis)
  - EpochAwareLens (paradigm-safe queries)
- stemedb-query: Query engine with materialized views

## Storage Extensions
- VoteStore: Vote aggregation with cached counts
- TrustRankStore: Agent reputation with decay
- AuditStore: Query audit trail
- IndexStore: SP/P/S index structures
- SupersessionStore: Epoch supersession chains

## SDKs
- sdk/go/steme: Go HTTP client with Ed25519 signing
- sdk/go/adk: ADK-Go tools for AI agents

## Documentation
- Updated CLAUDE.md, architecture.md, roadmap.md
- New ai-lookup entries for all services
- Use case docs for consumer health intelligence
- Arena roadmap for simulation advancement

Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com>
2026-02-01 13:22:44 -07:00
jordan
3cfaa1e1d3 feat: Complete Phase 1 (The Spine) - storage foundation
Phase 1 delivers the complete durability and storage layer:

- WAL with crash recovery: Append-only journal with BLAKE3 checksums,
  fsync guarantees, and proper seek-to-EOF on reopen
- Storage engine: sled-backed KVStore with scan_prefix for range queries
- Content-addressed storage: H:{hash}, V:{hash}, E:{hash} key patterns
- Ingestor: Background worker tailing WAL, writing to KV with 8-byte
  aligned record headers for rkyv zero-copy deserialization
- Comprehensive tests: 31 tests covering crash recovery, round-trips,
  and multi-cycle durability

New crates: stemedb-wal, stemedb-storage, stemedb-ingest

Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com>
2026-01-31 14:15:34 -07:00