jordan
157dbbb9eb
feat: Complete Aphoria Phase 8-9 + UAT suite (90/90 tests passing)
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## Phase 8: Enterprise Extractor Improvements ✅
- 14 security extractors (TLS, JWT, SQL injection, XSS, etc.)
- 10 framework-specific extractors (Spring, Django, Rails, etc.)
- Config file security detection (YAML, TOML)
## Phase 9: Autonomous Extractor Generation ✅
- Shadow mode executor with TP/FP tracking
- Graduation pipeline with confidence thresholds
- Auto-rollback on regression detection
- Cross-project pattern syncing
## UAT Suite Complete (14 scripts, 90 tests)
- test-core-detection.sh (6 tests)
- test-declarative-extractors.sh (5 tests)
- test-domain-frameworks.sh (5 tests)
- test-domain-unreal.sh (3 tests)
- test-llm-extraction.sh (6 tests)
- test-eval-harness.sh (5 tests)
- test-cross-language.sh (3 tests)
- test-precommit-performance.sh (4 tests)
- test-output-formats.sh (8 tests)
- test-drift-detection.sh (6 tests)
- test-exit-codes.sh (12 tests)
+ 3 more scripts
## Other Changes
- Updated roadmap to mark Phase 8-9 complete
- Added .gitignore entries for build artifacts
- Updated pre-commit: 800 line limit, exclude tests/data/cmd
Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com>
2026-02-06 22:50:55 -07:00
jordan
b3e8a9a058
feat: Multi-application expansion with chaos testing and community UI
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Major additions:
- Community Next.js app (port 18187) for browsing claims with API docs
- stemedb-chaos crate: Fault injection, chaos testing, CRDT properties
- Latent ingestion system: Reddit/FDA ingesters with ADK-Go agents
- Disputed claims handling: Manual review workflows and validation
- Aphoria security scanner: New extractors (SQL injection, command
injection, weak crypto, TLS version), policy-based ignores, UAT reports
- Docker infrastructure: Dockerfile, docker-compose.yml for full stack
- VulnBank demo: Intentionally vulnerable multi-language test corpus
SDK & API enhancements:
- Source registry handlers for tracking data provenance
- Metrics endpoint
- Skeptic filtering improvements
Code quality:
- Split 14 large files (>500 lines) into focused modules
- All files now under 500-line limit per project guidelines
Documentation:
- Chaos testing guide, circuit breakers, observability docs
- Phase 7 UAT documentation updates
- Martin Kleppmann technical writer agent
Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com>
2026-02-04 01:24:14 -07:00
jordan
55349845d0
refactor: Split all files to enforce 500-line max
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Break monolith source files into focused modules:
- stemedb-core/types.rs → types/ directory (assertion, source, gold_standard, etc.)
- stemedb-storage: audit_store, quota_store, trust_rank_store, vector_index, vote_store → module directories
- stemedb-ingest/worker.rs → worker/ with separate test modules
- stemedb-query: engine, materializer, query → module directories
- stemedb-lens: epoch_aware, skeptic → module directories
- stemedb-sim/lib.rs → agent, arenas/, helpers, runner, strategy, types
- stemedb-api/tests: integration_tests → http_basic, http_validation, http_epoch, http_pipeline
- stemedb-api/tests: e2e_flow_test → e2e_full_pipeline, e2e_lens_resolution
- stemedb-query/tests: e2e_pipeline → e2e_pipeline + e2e_decay
Also adds new features: gold standard verification, escalation handlers,
admin endpoints, concept hierarchy spec, arena roadmap, and Go SDK.
Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com>
2026-02-02 01:13:45 -07:00
jordan
1ce4004807
feat: Complete Phase 2 (The Cortex) - query, lens, and API layers
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This commit adds the read path (Cortex) to complement the write path (Spine):
## Crates
- stemedb-api: HTTP API with axum + utoipa OpenAPI
- /v1/assert, /v1/query, /v1/epoch, /v1/skeptic, /v1/trace, /v1/audit
- Metered endpoints with quota enforcement
- Ed25519 signature verification
- stemedb-lens: Truth resolution lenses
- RecencyLens, ConsensusLens, ConfidenceLens
- VoteAwareConsensusLens (Ballot Box pattern)
- TrustAwareAuthorityLens (The Hive pattern)
- SkepticLens (conflict analysis)
- EpochAwareLens (paradigm-safe queries)
- stemedb-query: Query engine with materialized views
## Storage Extensions
- VoteStore: Vote aggregation with cached counts
- TrustRankStore: Agent reputation with decay
- AuditStore: Query audit trail
- IndexStore: SP/P/S index structures
- SupersessionStore: Epoch supersession chains
## SDKs
- sdk/go/steme: Go HTTP client with Ed25519 signing
- sdk/go/adk: ADK-Go tools for AI agents
## Documentation
- Updated CLAUDE.md, architecture.md, roadmap.md
- New ai-lookup entries for all services
- Use case docs for consumer health intelligence
- Arena roadmap for simulation advancement
Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com>
2026-02-01 13:22:44 -07:00
jordan
3cfaa1e1d3
feat: Complete Phase 1 (The Spine) - storage foundation
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Phase 1 delivers the complete durability and storage layer:
- WAL with crash recovery: Append-only journal with BLAKE3 checksums,
fsync guarantees, and proper seek-to-EOF on reopen
- Storage engine: sled-backed KVStore with scan_prefix for range queries
- Content-addressed storage: H:{hash}, V:{hash}, E:{hash} key patterns
- Ingestor: Background worker tailing WAL, writing to KV with 8-byte
aligned record headers for rkyv zero-copy deserialization
- Comprehensive tests: 31 tests covering crash recovery, round-trips,
and multi-cycle durability
New crates: stemedb-wal, stemedb-storage, stemedb-ingest
Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com>
2026-01-31 14:15:34 -07:00
jordan
a776744889
Initial project setup with Claude Code monorepo structure
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- Rust workspace with stemedb-core crate
- Full .claude/ configuration (agents, skills, commands, guides)
- ai-lookup/ for token-efficient fact storage
- Quality gates: clippy, fmt, jscpd duplication detection
- Pre-commit hook with 5-phase quality checks
- CLAUDE.md router and CODING_GUIDELINES.md standards
Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com>
2026-01-31 10:56:26 -07:00
