Implements the --show-claims feature requested by users who need to verify
extractors are working correctly and debug false negatives.
Changes:
- Add `claims: Option<Vec<ExtractedClaim>>` field to ScanResult
- Add `--show-claims` CLI flag to scan command
- Add `show_claims: bool` parameter to ScanArgs
- Populate claims in scanner when flag is set (sorted by file, then line)
- Display claims in all output formats:
* Table: New "Extracted Claims" section with concept/value/file/line/confidence
* JSON: Top-level `claims` array with full claim details
* Markdown: "## Extracted Claims" section with table
* SARIF: Informational-level results (level: "note") for IDE integration
User outcome:
- `aphoria scan . --show-claims` displays all claims (not just conflicts)
- Users can verify extractors detected their code patterns
- Users can debug false negatives by seeing what WAS extracted
- Builds trust through transparency
Quality:
- Zero breaking changes (opt-in flag, backward compatible)
- All tests passing (943 passed)
- Clippy clean (no warnings)
- Manual testing verified all 4 output formats
Addresses user feedback from /home/jml/Workspace/maxwell/.aphoria/.notes-for-aphoria-team
Co-Authored-By: Claude Opus 4.6 <noreply@anthropic.com>
Major additions:
- Staged scanning modes (working tree, staged, committed) with git integration
- Drift detection for baseline vs current state comparisons
- Hosted API handlers for policy CRUD operations via StemeDB API
- stemedb-ontology crate with domain definitions and medical extractors
- Consumer health vertical UAT scenarios (GLP-1, gastroparesis, etc.)
- Aphoria development skill documentation
Code organization:
- Split large files into focused modules to stay under 500-line limit
- Extracted config tests, episteme helpers/drift/aliases, API helpers
Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com>
- Add PolicySourceStore for tracking where policies come from
- Implement claim extraction skill and API endpoints
- Add community UI text selection extractor component
- Create Go SDK aphoria client for policy operations
- Document patent specifications and legal disclosures
- Add guides: golden path loop, policy audit trails, pre-flight checks
- Expand Unreal Engine config extractor with source tracking
- Add UAT reports for policy source tracking validation
- Refactor tests.rs into modular test files
Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com>
- Add Hybrid Logical Clock (HLC) for causality tracking across nodes
- Implement Merkle tree for efficient diff/sync with BLAKE3 hashing
- Add CRDT-aware stores for assertions and votes with vector clocks
- Create stemedb-sync crate with anti-entropy and gossip protocols
- Add stemedb-rpc crate with gRPC sync service (proto definitions)
- Implement SupersessionChain for tracking assertion lifecycles
- Add Aphoria application for code analysis/reporting
- Add battery11 replication test scaffolding
- Fix .gitignore to exclude nested target directories
Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com>
