//! Aphoria - A code-level truth linter powered by Episteme
//!
//! Aphoria scans a codebase, extracts the decisions embedded in config and code,
//! and checks them against authoritative sources. It finds the places where what
//! your code *does* contradicts what the specs *say*.
//!
//! # Architecture
//!
//! ```text
//! ┌──────────────────────────────────────────────────────────────┐
//! │                        aphoria CLI                           │
//! │                                                              │
//! │  ┌──────────┐   ┌────────────┐   ┌──────────┐   ┌────────┐  │
//! │  │ Walker   │──▶│ Extractors │──▶│ Ingester │──▶│ Report │  │
//! │  └──────────┘   └────────────┘   └──────────┘   └────────┘  │
//! │                                       │              ▲       │
//! │                                       ▼              │       │
//! │                              ┌──────────────┐        │       │
//! │                              │   Episteme   │────────┘       │
//! │                              │   (local)    │                │
//! │                              └──────────────┘                │
//! └──────────────────────────────────────────────────────────────┘
//! ```
//!
//! # Example
//!
//! ```ignore
//! use aphoria::{run_scan, AphoriaConfig, ScanArgs};
//!
//! let args = ScanArgs {
//!     path: ".".into(),
//!     format: "table".to_string(),
//!     exit_code_enabled: false,
//! };
//! let config = AphoriaConfig::default();
//! let result = run_scan(args, &config).await?;
//!
//! println!("{}", result.display());
//! ```

// Module declarations
mod baseline;
mod bridge;
mod config;
pub mod corpus;
mod corpus_build;
mod episteme;
mod error;
pub mod extractors;
mod init;
pub mod policy;
mod policy_ops;
pub mod report;
pub mod research;
mod research_commands;
mod scan;
mod types;
mod walker;

// Public re-exports
pub use baseline::{set_baseline, show_diff};
pub use config::{AphoriaConfig, CorpusConfig};
pub use corpus::{CorpusBuildResult, CorpusBuilderInfo, CorpusRegistry};
pub use corpus_build::{build_corpus, list_corpus_sources, CorpusBuildArgs};
pub use error::AphoriaError;
pub use init::{initialize, show_status};
pub use policy::{PolicyManager, TrustPack};
pub use policy_ops::{acknowledge, bless, export_policy, import_policy, parse_value, ImportStats};
pub use research::{
    detect_gaps, Gap, GapRecord, GapStore, QualityReport, QualityValidator, ResearchConfig,
    ResearchOutcome, Researcher,
};
pub use research_commands::{record_scan_gaps, run_research, show_research_status, ResearchArgs};
pub use scan::run_scan;
pub use types::{
    AcknowledgeArgs, BlessArgs, ConflictResult, ConflictTrace, ExtractedClaim, PolicySourceInfo,
    ScanArgs, ScanMode, ScanResult, Verdict,
};

#[cfg(test)]
mod tests;