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jml 6430ff0fd6 fix(aphoria): move claims.toml to project root and fix verify integration 
## Root Cause
Claims file was in applications/aphoria/.aphoria/ but all commands looked
for .aphoria/claims.toml relative to project root. Additionally, .aphoria/
was fully gitignored, preventing version control of claims.

## Changes

### Path Fixes
- Move claims.toml from applications/aphoria/.aphoria/ to .aphoria/ at project root
- Update .gitignore: .aphoria/ → .aphoria/* with !.aphoria/claims.toml exception
- Now claims can be version controlled while keys remain secret

### Verify Integration (Scanner)
- scanner.rs: Load claims from ClaimsFile and call verify_claims()
- ScanResult: Add verify field with VerifyReport
- Report formatters: Add claim verification sections showing PASS/CONFLICT/MISSING

### Clippy Fix
- report/json.rs: Replace filter().map().expect() with filter_map()

## Verification
- aphoria scan . → Shows claim verification with verdicts
- aphoria verify run → Per-claim verification results
- aphoria verify map → Extractor coverage mapping (7/10 claims = 70%)
- aphoria claims list → Reads from project root
- aphoria claims create → Writes to project root
- All tests pass (1120+ aphoria tests)
- clippy --workspace passes

## Impact
Both primary use cases now work:
1. Day-to-day (commit-time): Skills can read/create claims via CLI
2. Audit (scan-time): Scanner verifies code against authored claims

Co-Authored-By: Claude Sonnet 4.5 <noreply@anthropic.com>
2026-02-08 11:09:57 +00:00
.agentive-remediation feat: Complete Aphoria Phase 8-9 + UAT suite (90/90 tests passing) 2026-02-06 22:50:55 -07:00
.aphoria fix(aphoria): move claims.toml to project root and fix verify integration 2026-02-08 11:09:57 +00:00
.cargo Initial project setup with Claude Code monorepo structure 2026-01-31 10:56:26 -07:00
.claude fix(aphoria): move claims.toml to project root and fix verify integration 2026-02-08 11:09:57 +00:00
ai-lookup feat(aphoria): implement claims architecture (A1-A5) with verify engine, corpus, coverage, and explain 2026-02-08 09:11:47 +00:00
applications fix(aphoria): move claims.toml to project root and fix verify integration 2026-02-08 11:09:57 +00:00
batteries feat: WAL hardening (Phase 5B) - CRC32C, crash recovery, group commit, log rotation 2026-02-02 12:36:35 -07:00
cmd feat: Complete Aphoria Phase 8-9 + UAT suite (90/90 tests passing) 2026-02-06 22:50:55 -07:00
community feat: Ingestor deadlock fix + blessed assertion tracking + patent docs 2026-02-04 03:41:08 -07:00
crates fix(aphoria): move claims.toml to project root and fix verify integration 2026-02-08 11:09:57 +00:00
demo/keys feat: Complete Aphoria Phase 8-9 + UAT suite (90/90 tests passing) 2026-02-06 22:50:55 -07:00
docs feat(aphoria): implement claims architecture (A1-A5) with verify engine, corpus, coverage, and explain 2026-02-08 09:11:47 +00:00
latent feat: Multi-application expansion with chaos testing and community UI 2026-02-04 01:24:14 -07:00
research-requests feat(aphoria): implement claims architecture (A1-A5) with verify engine, corpus, coverage, and explain 2026-02-08 09:11:47 +00:00
scripts feat(aphoria): implement claims architecture (A1-A5) with verify engine, corpus, coverage, and explain 2026-02-08 09:11:47 +00:00
sdk/go feat: Complete Aphoria Phase 8-9 + UAT suite (90/90 tests passing) 2026-02-06 22:50:55 -07:00
uat feat(aphoria): implement claims architecture (A1-A5) with verify engine, corpus, coverage, and explain 2026-02-08 09:11:47 +00:00
use-cases feat: Multi-application expansion with chaos testing and community UI 2026-02-04 01:24:14 -07:00
.aphoriaignore feat(aphoria): implement ignore & exclusion system (Phase 16) 2026-02-07 17:28:50 -07:00
.dockerignore feat: Complete Aphoria Phase 8-9 + UAT suite (90/90 tests passing) 2026-02-06 22:50:55 -07:00
.gitignore fix(aphoria): move claims.toml to project root and fix verify integration 2026-02-08 11:09:57 +00:00
.jscpd.json Initial project setup with Claude Code monorepo structure 2026-01-31 10:56:26 -07:00
aphoria.toml feat(aphoria): implement ignore & exclusion system (Phase 16) 2026-02-07 17:28:50 -07:00
architecture.md feat: Complete Phase 2 (The Cortex) - query, lens, and API layers 2026-02-01 13:22:44 -07:00
arena-roadmap.md refactor: Split all files to enforce 500-line max 2026-02-02 01:13:45 -07:00
Cargo.toml perf: speed up test suite with profile.test optimization 2026-02-07 20:21:25 -07:00
CLAUDE.md fix(aphoria): move claims.toml to project root and fix verify integration 2026-02-08 11:09:57 +00:00
clippy.toml Initial project setup with Claude Code monorepo structure 2026-01-31 10:56:26 -07:00
CODING_GUIDELINES.md Initial project setup with Claude Code monorepo structure 2026-01-31 10:56:26 -07:00
docker-compose.yml feat: Multi-application expansion with chaos testing and community UI 2026-02-04 01:24:14 -07:00
Dockerfile feat: Multi-application expansion with chaos testing and community UI 2026-02-04 01:24:14 -07:00
GEMINI.md feat: Complete Phase 1 (The Spine) - storage foundation 2026-01-31 14:15:34 -07:00
Makefile perf: speed up test suite with profile.test optimization 2026-02-07 20:21:25 -07:00
position.md feat: Complete Phase 2 (The Cortex) - query, lens, and API layers 2026-02-01 13:22:44 -07:00
quickstart.md feat: Multi-application expansion with chaos testing and community UI 2026-02-04 01:24:14 -07:00
roadmap-archive.md feat(aphoria): implement claims architecture (A1-A5) with verify engine, corpus, coverage, and explain 2026-02-08 09:11:47 +00:00
roadmap.md feat(aphoria): implement claims architecture (A1-A5) with verify engine, corpus, coverage, and explain 2026-02-08 09:11:47 +00:00
rustfmt.toml Initial project setup with Claude Code monorepo structure 2026-01-31 10:56:26 -07:00
simulation-vision.md feat: Complete Phase 1 (The Spine) - storage foundation 2026-01-31 14:15:34 -07:00
stemedb.pdf feat: Multi-application expansion with chaos testing and community UI 2026-02-04 01:24:14 -07:00
usage.md feat: Multi-application expansion with chaos testing and community UI 2026-02-04 01:24:14 -07:00
vision.md feat: Complete Aphoria Phase 14 - Governance Workflows 2026-02-07 05:16:26 -07:00
what-is-episteme.md feat: WAL hardening (Phase 5B) - CRC32C, crash recovery, group commit, log rotation 2026-02-02 12:36:35 -07:00