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8f6506b70a
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jordan 8f6506b70a feat: Aphoria scan modes + stemedb-ontology crate + consumer health UAT 
Major additions:
- Staged scanning modes (working tree, staged, committed) with git integration
- Drift detection for baseline vs current state comparisons
- Hosted API handlers for policy CRUD operations via StemeDB API
- stemedb-ontology crate with domain definitions and medical extractors
- Consumer health vertical UAT scenarios (GLP-1, gastroparesis, etc.)
- Aphoria development skill documentation

Code organization:
- Split large files into focused modules to stay under 500-line limit
- Extracted config tests, episteme helpers/drift/aliases, API helpers

Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com>
2026-02-04 21:57:33 -07:00
.agentive-remediation feat: Multi-application expansion with chaos testing and community UI 2026-02-04 01:24:14 -07:00
.cargo Initial project setup with Claude Code monorepo structure 2026-01-31 10:56:26 -07:00
.claude feat: Aphoria scan modes + stemedb-ontology crate + consumer health UAT 2026-02-04 21:57:33 -07:00
ai-lookup feat: Multi-application expansion with chaos testing and community UI 2026-02-04 01:24:14 -07:00
applications/aphoria feat: Aphoria scan modes + stemedb-ontology crate + consumer health UAT 2026-02-04 21:57:33 -07:00
batteries feat: WAL hardening (Phase 5B) - CRC32C, crash recovery, group commit, log rotation 2026-02-02 12:36:35 -07:00
community feat: Ingestor deadlock fix + blessed assertion tracking + patent docs 2026-02-04 03:41:08 -07:00
crates feat: Aphoria scan modes + stemedb-ontology crate + consumer health UAT 2026-02-04 21:57:33 -07:00
disputed feat: Multi-application expansion with chaos testing and community UI 2026-02-04 01:24:14 -07:00
docs feat: Aphoria scan modes + stemedb-ontology crate + consumer health UAT 2026-02-04 21:57:33 -07:00
latent feat: Multi-application expansion with chaos testing and community UI 2026-02-04 01:24:14 -07:00
scripts feat: Multi-application expansion with chaos testing and community UI 2026-02-04 01:24:14 -07:00
sdk/go feat: Aphoria policy source tracking + claim extraction pipeline 2026-02-04 02:35:02 -07:00
uat feat: Aphoria scan modes + stemedb-ontology crate + consumer health UAT 2026-02-04 21:57:33 -07:00
use-cases feat: Multi-application expansion with chaos testing and community UI 2026-02-04 01:24:14 -07:00
.dockerignore feat: Multi-application expansion with chaos testing and community UI 2026-02-04 01:24:14 -07:00
.gitignore feat: Multi-application expansion with chaos testing and community UI 2026-02-04 01:24:14 -07:00
.jscpd.json Initial project setup with Claude Code monorepo structure 2026-01-31 10:56:26 -07:00
architecture.md feat: Complete Phase 2 (The Cortex) - query, lens, and API layers 2026-02-01 13:22:44 -07:00
arena-roadmap.md refactor: Split all files to enforce 500-line max 2026-02-02 01:13:45 -07:00
Cargo.toml feat: Aphoria scan modes + stemedb-ontology crate + consumer health UAT 2026-02-04 21:57:33 -07:00
CLAUDE.md feat: Aphoria scan modes + stemedb-ontology crate + consumer health UAT 2026-02-04 21:57:33 -07:00
clippy.toml Initial project setup with Claude Code monorepo structure 2026-01-31 10:56:26 -07:00
CODING_GUIDELINES.md Initial project setup with Claude Code monorepo structure 2026-01-31 10:56:26 -07:00
docker-compose.yml feat: Multi-application expansion with chaos testing and community UI 2026-02-04 01:24:14 -07:00
Dockerfile feat: Multi-application expansion with chaos testing and community UI 2026-02-04 01:24:14 -07:00
GEMINI.md feat: Complete Phase 1 (The Spine) - storage foundation 2026-01-31 14:15:34 -07:00
Makefile feat: Add quickstart "Beyond Hello World" sections with Skeptic and Layered endpoints 2026-02-01 21:00:59 -07:00
position.md feat: Complete Phase 2 (The Cortex) - query, lens, and API layers 2026-02-01 13:22:44 -07:00
quickstart.md feat: Multi-application expansion with chaos testing and community UI 2026-02-04 01:24:14 -07:00
roadmap.md feat: Multi-application expansion with chaos testing and community UI 2026-02-04 01:24:14 -07:00
rustfmt.toml Initial project setup with Claude Code monorepo structure 2026-01-31 10:56:26 -07:00
simulation-vision.md feat: Complete Phase 1 (The Spine) - storage foundation 2026-01-31 14:15:34 -07:00
stemedb.pdf feat: Multi-application expansion with chaos testing and community UI 2026-02-04 01:24:14 -07:00
usage.md feat: Multi-application expansion with chaos testing and community UI 2026-02-04 01:24:14 -07:00
vision.md refactor: Split all files to enforce 500-line max 2026-02-02 01:13:45 -07:00
what-is-episteme.md feat: WAL hardening (Phase 5B) - CRC32C, crash recovery, group commit, log rotation 2026-02-02 12:36:35 -07:00