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jml 9bfa626203 docs: reorganize documentation structure for clarity 
Major documentation restructure to improve discoverability and reduce duplication.

## Changes

**Deleted (Archived/Consolidated)**:
- Removed duplicate getting started guides
- Archived outdated planning documents
- Consolidated corpus and configuration docs
- Removed obsolete vision/spec files (superseded by vision.md)
- Cleaned up scrapyard and old PDFs

**New Structure**:
- docs/about/ - Project overview and introduction
- docs/guides/ - User guides (moved from root)
- docs/specs/ - Technical specifications
- docs/sdk/ - SDK documentation (Go)
- docs/references/ - API references
- docs/archive/ - Archived historical docs
- applications/aphoria/docs/advanced/ - Advanced topics
- applications/aphoria/docs/reference/ - CLI reference
- applications/aphoria/docs/archive/ - Archived aphoria docs

**Updated**:
- README.md - New root README with clear navigation
- CONTRIBUTING.md - Contribution guidelines
- CLAUDE.md - Updated paths to new structure
- roadmap.md - Added recent completions

## Files Changed
- 57 files changed
- 1,977 insertions(+)
- 961 deletions(-)

**Net change**: +1,016 lines (added CONTRIBUTING.md, README.md, reorganized content)

Co-Authored-By: Claude Sonnet 4.5 <noreply@anthropic.com>
2026-02-11 07:33:40 +00:00
..
admission-control.md feat: Phase 6 UAT - Admission control, HLC recency, cluster coordination 2026-02-03 00:43:37 -07:00
aphoria-config.md feat: Aphoria enterprise features + ontology SDK + file length compliance 2026-02-05 12:55:29 -07:00
aphoria-flywheel.md feat(aphoria): implement Day 3 debugging features and comprehensive documentation 2026-02-11 03:31:06 +00:00
branching.md Initial project setup with Claude Code monorepo structure 2026-01-31 10:56:26 -07:00
chaos-testing.md feat: Multi-application expansion with chaos testing and community UI 2026-02-04 01:24:14 -07:00
circuit-breakers.md feat: Multi-application expansion with chaos testing and community UI 2026-02-04 01:24:14 -07:00
content-defense.md feat: Phase 7 Content Defense + code structure refactoring 2026-02-03 12:44:05 -07:00
gardener.md feat: Complete Phase 1 (The Spine) - storage foundation 2026-01-31 14:15:34 -07:00
observability.md feat(aphoria): implement claims architecture (A1-A5) with verify engine, corpus, coverage, and explain 2026-02-08 09:11:47 +00:00
phase6-uat.md feat: Phase 6 UAT - Admission control, HLC recency, cluster coordination 2026-02-03 00:43:37 -07:00
phase7-uat.md feat: Multi-application expansion with chaos testing and community UI 2026-02-04 01:24:14 -07:00
production-readiness.md feat: Complete Aphoria Phase 8-9 + UAT suite (90/90 tests passing) 2026-02-06 22:50:55 -07:00
query-audit.md feat: Multi-application expansion with chaos testing and community UI 2026-02-04 01:24:14 -07:00
simulation.md docs: reorganize documentation structure for clarity 2026-02-11 07:33:40 +00:00
trust-rank.md feat: Complete Phase 2 (The Cortex) - query, lens, and API layers 2026-02-01 13:22:44 -07:00
trustrank.md feat: WAL hardening (Phase 5B) - CRC32C, crash recovery, group commit, log rotation 2026-02-02 12:36:35 -07:00