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jml ce86eee996 chore(dogfood): archive dated documentation and remove database files from git 
Priority 1 (Critical): Database files removed from git tracking
- Added **/.aphoria/db/ and **/.aphoria/wal/ to .gitignore
- Removed 7 database files from dogfood/dbpool/.aphoria/db/
- Database files are runtime state (like target/), not source code
- Prevents repository bloat and incorrect content type in git

Priority 2 (Housekeeping): Dated documentation archived
- Created archive/ structure with fixes/ and deprecated/ subdirectories
- Moved SYSTEMATIC-FIXES-2026-02-10.md to archive/fixes/
- Moved SYSTEMATIC-FIXES-COMPLETE.md to archive/fixes/
- Moved PROJECT2-QUICKSTART-DEPRECATED.md to archive/deprecated/
- Moved PROJECT2-READY.md to archive/deprecated/
- Moved verify-project2-ready.sh to archive/deprecated/
- Created archive/README.md documenting archival policy

These files are preserved for historical reference but no longer clutter
the main dogfood directory. See archive/README.md for details.

Co-Authored-By: Claude Sonnet 4.5 <noreply@anthropic.com>
2026-02-11 06:12:34 +00:00
.agentive-remediation feat: Complete Aphoria Phase 8-9 + UAT suite (90/90 tests passing) 2026-02-06 22:50:55 -07:00
.aphoria feat(aphoria): implement Day 3 debugging features and comprehensive documentation 2026-02-11 03:31:06 +00:00
.cargo Initial project setup with Claude Code monorepo structure 2026-01-31 10:56:26 -07:00
.claude feat(aphoria): implement Day 3 debugging features and comprehensive documentation 2026-02-11 03:31:06 +00:00
ai-lookup feat(aphoria): implement Day 3 debugging features and comprehensive documentation 2026-02-11 03:31:06 +00:00
applications chore(dogfood): archive dated documentation and remove database files from git 2026-02-11 06:12:34 +00:00
batteries feat: WAL hardening (Phase 5B) - CRC32C, crash recovery, group commit, log rotation 2026-02-02 12:36:35 -07:00
cmd feat: Complete Aphoria Phase 8-9 + UAT suite (90/90 tests passing) 2026-02-06 22:50:55 -07:00
community feat: Ingestor deadlock fix + blessed assertion tracking + patent docs 2026-02-04 03:41:08 -07:00
crates fix(api): enable non-strict mode for URL-encoded bracket notation 2026-02-09 16:11:25 +00:00
demo/keys feat: Complete Aphoria Phase 8-9 + UAT suite (90/90 tests passing) 2026-02-06 22:50:55 -07:00
docs feat(aphoria): add git commit tracking + comprehensive documentation 2026-02-08 18:36:46 +00:00
latent feat: Multi-application expansion with chaos testing and community UI 2026-02-04 01:24:14 -07:00
research-requests feat(aphoria): implement claims architecture (A1-A5) with verify engine, corpus, coverage, and explain 2026-02-08 09:11:47 +00:00
scripts feat(aphoria): implement claims architecture (A1-A5) with verify engine, corpus, coverage, and explain 2026-02-08 09:11:47 +00:00
sdk/go feat: Complete Aphoria Phase 8-9 + UAT suite (90/90 tests passing) 2026-02-06 22:50:55 -07:00
uat feat(aphoria): implement claims architecture (A1-A5) with verify engine, corpus, coverage, and explain 2026-02-08 09:11:47 +00:00
use-cases feat: Multi-application expansion with chaos testing and community UI 2026-02-04 01:24:14 -07:00
.aphoriaignore feat(aphoria): implement ignore & exclusion system (Phase 16) 2026-02-07 17:28:50 -07:00
.dockerignore feat: Complete Aphoria Phase 8-9 + UAT suite (90/90 tests passing) 2026-02-06 22:50:55 -07:00
.gitignore chore(dogfood): archive dated documentation and remove database files from git 2026-02-11 06:12:34 +00:00
.jscpd.json Initial project setup with Claude Code monorepo structure 2026-01-31 10:56:26 -07:00
aphoria.toml feat(aphoria): implement ignore & exclusion system (Phase 16) 2026-02-07 17:28:50 -07:00
architecture.md feat: Complete Phase 2 (The Cortex) - query, lens, and API layers 2026-02-01 13:22:44 -07:00
arena-roadmap.md refactor: Split all files to enforce 500-line max 2026-02-02 01:13:45 -07:00
Cargo.toml perf: speed up test suite with profile.test optimization 2026-02-07 20:21:25 -07:00
CLAUDE.md feat(aphoria): implement Day 3 debugging features and comprehensive documentation 2026-02-11 03:31:06 +00:00
clippy.toml Initial project setup with Claude Code monorepo structure 2026-01-31 10:56:26 -07:00
CODING_GUIDELINES.md Initial project setup with Claude Code monorepo structure 2026-01-31 10:56:26 -07:00
CORPUS-QUICK-START.md fix(api): enable querying of CLI-created community corpus items 2026-02-09 15:54:35 +00:00
docker-compose.yml feat: Multi-application expansion with chaos testing and community UI 2026-02-04 01:24:14 -07:00
Dockerfile feat: Multi-application expansion with chaos testing and community UI 2026-02-04 01:24:14 -07:00
DOCUMENTATION_UPDATES.md feat(aphoria): add git commit tracking + comprehensive documentation 2026-02-08 18:36:46 +00:00
GEMINI.md feat: Complete Phase 1 (The Spine) - storage foundation 2026-01-31 14:15:34 -07:00
Makefile perf: speed up test suite with profile.test optimization 2026-02-07 20:21:25 -07:00
position.md feat: Complete Phase 2 (The Cortex) - query, lens, and API layers 2026-02-01 13:22:44 -07:00
quickstart.md feat: Multi-application expansion with chaos testing and community UI 2026-02-04 01:24:14 -07:00
roadmap-archive.md feat(aphoria): implement claims architecture (A1-A5) with verify engine, corpus, coverage, and explain 2026-02-08 09:11:47 +00:00
roadmap.md feat(aphoria): implement claims architecture (A1-A5) with verify engine, corpus, coverage, and explain 2026-02-08 09:11:47 +00:00
rustfmt.toml Initial project setup with Claude Code monorepo structure 2026-01-31 10:56:26 -07:00
scan-results-v1.json feat(aphoria): implement Day 3 debugging features and comprehensive documentation 2026-02-11 03:31:06 +00:00
simulation-vision.md feat: Complete Phase 1 (The Spine) - storage foundation 2026-01-31 14:15:34 -07:00
usage.md feat: Multi-application expansion with chaos testing and community UI 2026-02-04 01:24:14 -07:00
vision.md feat: Complete Aphoria Phase 14 - Governance Workflows 2026-02-07 05:16:26 -07:00
what-is-episteme.md feat: WAL hardening (Phase 5B) - CRC32C, crash recovery, group commit, log rotation 2026-02-02 12:36:35 -07:00