stemedb/applications/aphoria/README.md
jordan 0ece696f5d docs: add solo developer and enterprise pilot guides
- Created solo-developer-guide.md for individual/side projects
- Created enterprise-pilot-guide.md with 7-phase pilot methodology
- Updated guides/README.md with new guide references
- Updated main README.md with guides table and time estimates

Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com>
2026-02-07 07:45:56 -07:00

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# Aphoria
**A code-level truth linter powered by Episteme.**
Aphoria scans your codebase for configuration patterns that contradict authoritative technical standards (RFCs, OWASP, vendor docs). Unlike linters that check syntax or SAST tools that find vulnerability patterns, Aphoria validates **intent against authority**.
```bash
$ aphoria scan .
BLOCK code://python/requests/tls/cert_verification
Your code: verify=False (api/client.py:42)
RFC 5246: TLS certificate verification MUST be enabled
Conflict: 0.92
1 conflict found (1 BLOCK).
```
---
## Quick Start
### Install
```bash
# From source
cd applications/aphoria
cargo install --path .
# Verify
aphoria --version
```
### Initialize
```bash
aphoria init
```
This loads the authoritative corpus (RFCs, OWASP guidelines) into your local database.
### Scan
```bash
# Quick scan (ephemeral, fast)
aphoria scan .
# With persistence (enables diff/baseline)
aphoria scan --persist
# CI mode (exit code 1 on BLOCK)
aphoria scan --exit-code
# Pre-commit (staged files only)
aphoria scan --staged --exit-code
```
### Handle Conflicts
**Fix the code:**
```python
# Before: verify=False
# After:
requests.get(url, verify=True)
```
**Or acknowledge intentionally:**
```bash
aphoria ack "code://python/requests/tls/cert_verification" \
--reason "Local dev environment with self-signed certs"
```
---
## Output Formats
```bash
aphoria scan --format table # Human-readable (default)
aphoria scan --format json # Machine-readable
aphoria scan --format sarif # GitHub Security tab
aphoria scan --format markdown # Documentation
```
---
## Pre-commit Integration
```yaml
# .pre-commit-config.yaml
repos:
- repo: local
hooks:
- id: aphoria
name: Aphoria truth check
entry: aphoria scan --staged --exit-code
language: system
pass_filenames: false
```
---
## CI Integration (GitHub Actions)
```yaml
- name: Install Aphoria
run: cargo install --path applications/aphoria
- name: Run Aphoria Scan
run: aphoria scan --exit-code --format sarif > results.sarif
- name: Upload SARIF
uses: github/codeql-action/upload-sarif@v2
with:
sarif_file: results.sarif
```
---
## Key Commands
| Command | Description |
|---------|-------------|
| `aphoria scan` | Scan for conflicts with authoritative sources |
| `aphoria ack` | Acknowledge a conflict as intentional |
| `aphoria bless` | Define a pattern as your authoritative standard |
| `aphoria policy export` | Export standards as a Trust Pack |
| `aphoria policy import` | Import a Trust Pack from your security team |
| `aphoria governance pending` | List approval requests (Phase 14) |
| `aphoria audit export` | Export audit trail for SOC 2 compliance |
---
## Conflict Verdicts
| Verdict | Description | CI Behavior |
|---------|-------------|-------------|
| **BLOCK** | High-confidence conflict with RFC/OWASP | Fails with `--exit-code` |
| **FLAG** | Moderate-confidence conflict | Passes, visible in report |
| **ACK** | Acknowledged conflict | Passes, tracked for audit |
| **PASS** | No conflict | - |
---
## Guides
| Guide | Audience | Time |
|-------|----------|------|
| [Solo Developer Guide](docs/guides/solo-developer-guide.md) | Individual developers, side projects | 2 min |
| [Enterprise Pilot Guide](docs/guides/enterprise-pilot-guide.md) | Security teams running pilots | 4 weeks |
| [Enterprise Quick Start](docs/guides/enterprise-quick-start.md) | Platform engineering | 5 min |
| [The First Scan](docs/guides/the-first-scan.md) | Everyone | 10 min |
---
## What Aphoria Is Not
- **Not a linter.** Linters check syntax. Aphoria checks decisions against authoritative sources.
- **Not SAST.** SAST finds vulnerability patterns. Aphoria finds contradictions to specific standards.
- **Not AI autocomplete.** Copilot suggests code from the internet. Aphoria surfaces *your org's* decisions at the moment you contradict them.
---
## License
See [LICENSE](../../LICENSE) for details.