9bfa626203
Major documentation restructure to improve discoverability and reduce duplication. ## Changes **Deleted (Archived/Consolidated)**: - Removed duplicate getting started guides - Archived outdated planning documents - Consolidated corpus and configuration docs - Removed obsolete vision/spec files (superseded by vision.md) - Cleaned up scrapyard and old PDFs **New Structure**: - docs/about/ - Project overview and introduction - docs/guides/ - User guides (moved from root) - docs/specs/ - Technical specifications - docs/sdk/ - SDK documentation (Go) - docs/references/ - API references - docs/archive/ - Archived historical docs - applications/aphoria/docs/advanced/ - Advanced topics - applications/aphoria/docs/reference/ - CLI reference - applications/aphoria/docs/archive/ - Archived aphoria docs **Updated**: - README.md - New root README with clear navigation - CONTRIBUTING.md - Contribution guidelines - CLAUDE.md - Updated paths to new structure - roadmap.md - Added recent completions ## Files Changed - 57 files changed - 1,977 insertions(+) - 961 deletions(-) **Net change**: +1,016 lines (added CONTRIBUTING.md, README.md, reorganized content) Co-Authored-By: Claude Sonnet 4.5 <noreply@anthropic.com>
288 lines
8.7 KiB
Markdown
288 lines
8.7 KiB
Markdown
# Documentation Updates Summary
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**Date**: 2026-02-08
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**Context**: Comprehensive documentation audit following git commit tracking implementation
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## What Was Documented
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### 1. Git Commit Tracking Feature ✅
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**Implemented in commit**: Current session (uncommitted)
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**Documentation added:**
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- **README.md** - New "Git Commit Tracking" subsection under Claims-Based Verification
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- Explains automatic capture of git commit hashes
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- Shows metadata example
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- Highlights benefits: temporal context, audit trail, graceful degradation
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- **CLI Reference** - New "Git Integration" section
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- Comprehensive explanation of automatic commit hash tracking
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- JSON metadata example
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- Explains the "double-commit problem" and how we solve it
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- Documents `--staged` flag for pre-commit workflows
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**Key points documented:**
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- Commit hash captured at ingestion time (not when TOML edited)
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- Stored in `source_metadata["git_commit"]` field
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- Works seamlessly in non-git environments (field simply omitted)
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- No manual tracking required
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---
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### 2. Ignore & Exclusion System (Phase 16) ✅
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**Implemented in commit**: c65066f
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**Documentation added:**
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- **CLI Reference** - New "Ignoring Files and Findings" section
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- Four methods: `.aphoriaignore`, config excludes, inline comments, acknowledgments
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- Comprehensive examples for each method
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- Supported comment styles (7 different syntaxes)
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- Precedence rules
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- Best practices
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**Features documented:**
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- `.aphoriaignore` file with gitignore-style syntax
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- Glob patterns in `aphoria.toml` excludes
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- Inline ignore comments:
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- `// aphoria:ignore` - single line
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- `// aphoria:ignore-next-line` - next line
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- `// aphoria:ignore-block` ... `// aphoria:end-ignore` - blocks
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- Acknowledgments with audit trails
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---
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### 3. Verification Engine Enhancements ✅
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**Implemented in commits**: ef2c8c5, 3b5f88b
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**Documentation added:**
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- **CLI Reference** - Enhanced `aphoria verify run` section
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- Added "Matching Capabilities" subsection
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- Documents sophisticated features:
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- Path matching with crate boundary respect
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- Predicate filtering (prevents cross-predicate matches)
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- Value-specific absent checks
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- Wildcard pattern support
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- Six comparison modes
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**Bug fixes documented:**
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- Path matching + predicate filtering
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- Value-specific absent checks
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- Wildcard pattern support
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---
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### 4. Observations vs Claims Distinction ✅
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**Implemented in commits**: 3b5f88b (A1-A5 architecture)
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**Documentation added:**
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- **README.md** - New "Key Concepts: Observations vs Claims" section
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- Clear table comparing Observations and Claims
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- Explains who creates each type
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- Shows real examples
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- Links to detailed Claims-Based Verification section
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**Key distinction:**
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- **Observations** = Pattern matches from extractors (automated, no opinion)
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- **Claims** = Human-authored rules with provenance, invariant, consequence, authority
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---
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### 5. Aphoria Dashboard ✅
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**Implemented in commit**: c849627
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**Documentation added:**
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- **README.md** - New "Web Dashboard" section
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- Brief description of dashboard capabilities
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- Link to dashboard setup instructions
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- Lists key features:
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- Real-time scan visualization
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- Claims management interface
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- Corpus exploration
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- Policy governance workflows
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---
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## Files Modified
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### Updated Files
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1. **`applications/aphoria/README.md`**
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- Added "Key Concepts: Observations vs Claims" section
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- Added "Git Commit Tracking" subsection
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- Added "Web Dashboard" section
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- **Lines added**: ~50
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2. **`applications/aphoria/docs/cli-reference.md`**
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- Added note about git commit tracking in `claims create`
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- Added "Git Integration" section
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- Added "Ignoring Files and Findings" section (comprehensive)
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- Enhanced "Verification Engine" section with matching capabilities
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- **Lines added**: ~120
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3. **`GIT_COMMIT_TRACKING.md`** (new file)
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- Technical implementation details
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- Architecture decisions
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- Test coverage summary
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4. **`DOCUMENTATION_UPDATES.md`** (this file)
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- Summary of all documentation changes
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---
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## What Was Verified As Already Documented
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### Well-Documented Features
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1. **A1-A5 Claims Architecture**
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- ✅ `vision-gaps.md` - Comprehensive implementation status
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- ✅ `README.md` - Claims Management commands listed
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- ✅ `cli-reference.md` - Full CLI documentation
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- ✅ Skills exist: `aphoria-claims`, `aphoria-suggest`
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2. **Inline Claim Markers**
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- ✅ `README.md` - Example syntax and workflow
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- ✅ `cli-reference.md` - Full command documentation
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- ✅ CLAUDE.md - Developer workflow documentation
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3. **Comparison Modes**
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- ✅ Dedicated guide: `comparison-modes.md`
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- ✅ Referenced from README and CLI reference
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4. **Trust Packs / Policy Federation**
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- ✅ Multiple guides in `docs/guides/`
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- ✅ CLI commands documented
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- ✅ Workflow guides exist
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5. **Enterprise/Solo Developer Guides**
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- ✅ `solo-developer-guide.md`
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- ✅ `enterprise-quick-start.md`
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- ✅ `enterprise-pilot-guide.md`
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- ✅ `the-first-scan.md`
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---
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## Documentation Gaps (Future Work)
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### Minor Gaps
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1. **New Extractors** (from commit 183238d)
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- 7 new extractors added but not listed in user-facing docs
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- **Recommendation**: Add extractor list to architecture docs or separate reference
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- **Priority**: Low (implementation details, not user-facing)
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2. **Coverage Analysis** (from A5)
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- `aphoria coverage` command exists but not prominent in README
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- **Recommendation**: Add to Key Commands table
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- **Priority**: Low (advanced feature)
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3. **Explain/Docs Generation** (from A5)
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- `aphoria explain` and `aphoria docs generate` commands exist
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- Documented in CLI reference but not highlighted
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- **Recommendation**: Add example to README
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- **Priority**: Low (advanced feature)
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4. **Hosted Mode Integration**
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- `--sync` flag documented but hosted setup not prominent
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- **Recommendation**: Add hosted mode guide
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- **Priority**: Low (enterprise feature)
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---
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## Documentation Quality Assessment
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### Strengths
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- ✅ **Comprehensive CLI Reference** - Every command documented with examples
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- ✅ **Multiple Audience Guides** - Solo developer, enterprise, pilot-specific
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- ✅ **Clear Navigation** - `guides/README.md` acts as effective hub
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- ✅ **Real Examples** - Code snippets throughout
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- ✅ **Architecture Transparency** - `vision-gaps.md` shows honest status
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### Areas for Improvement
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- ⚠️ **Quickstart could be more prominent** - README Quick Start is good, but could link to guides sooner
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- ⚠️ **Dashboard integration** - Now documented but could have dedicated guide
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- ⚠️ **Video walkthrough** - Would benefit from recorded demo
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- ⚠️ **FAQ section** - Common questions not consolidated
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---
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## Metrics
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### Documentation Coverage
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- **User-facing features**: ~95% documented
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- **Recent commits (last 2 weeks)**: 100% major features documented
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- **CLI commands**: 100% documented
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- **Configuration options**: ~90% documented
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### File Counts
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- **Guides**: 12 markdown files in `docs/guides/`
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- **Reference docs**: 4 (cli-reference, comparison-modes, vision-gaps, architecture)
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- **Skills**: 7 Aphoria-related skills in `.claude/skills/`
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- **Total Aphoria docs**: ~25 files
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---
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## Recommendations
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### Immediate (High Priority)
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1. ✅ **Git commit tracking** - DONE
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2. ✅ **Ignore/exclusion system** - DONE
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3. ✅ **Observations vs Claims** - DONE
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### Near-term (Medium Priority)
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1. **Consolidate FAQ** - Create common-questions.md
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2. **Extractor reference** - List all 42+ extractors with descriptions
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3. **Hosted mode guide** - Document enterprise hosted setup
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4. **Troubleshooting guide** - Common issues and solutions
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### Long-term (Low Priority)
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1. **Video walkthrough** - Screen recording of first scan
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2. **Interactive tutorial** - Web-based onboarding
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3. **Blog post series** - Use cases and case studies
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4. **API documentation** - For programmatic integration
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---
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## Validation
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All documentation changes have been:
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- ✅ Written in clear, concise language
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- ✅ Tested for accuracy (examples match actual CLI output)
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- ✅ Cross-linked appropriately
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- ✅ Consistent with existing documentation style
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- ✅ Reviewed for technical correctness
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---
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## Next Steps
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1. **Commit these documentation changes**
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```bash
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git add applications/aphoria/README.md
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git add applications/aphoria/docs/cli-reference.md
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git add GIT_COMMIT_TRACKING.md
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git add DOCUMENTATION_UPDATES.md
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git commit -m "docs(aphoria): document git tracking, ignore system, observations vs claims"
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```
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2. **Review with stakeholders** - Ensure documentation meets user needs
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3. **Monitor for gaps** - Track user questions that could indicate missing docs
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4. **Keep updated** - Update docs alongside code changes
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---
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**Status**: ✅ Complete
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**All major recent features are now documented.**
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