stemedb/applications/aphoria/roadmap.md

Aphoria Roadmap

Completed phases archived in roadmap-archive.md

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Status Overview

Phase	Deliverable	Status
0–9, 11–13, 16–17	Core CLI, Extractors (42), LLM, Learning, Enterprise, Lifecycle, Pattern Enrichment	✅ Archived
CC	Corpus Infrastructure (Community Corpus, Wiki Import, Pattern Aggregation, Async Default)	✅ Complete
10	UX & Enterprise Polish	🔄 Partial (10.1 ✅, 10.2–10.3 ⬜)
14	Governance Workflows	🎯 Current
15	Evidence Source Integration	⬜ Future
A6	AST-Aware Observation & Claim Verification	⬜ Future

Current State

• 42 built-in extractors + declarative custom extractors
• Emergent corpus: RFC, OWASP, Vendor sources + community-driven patterns (CC.6 ✅)
• Community corpus enabled by default (CC.7 ✅): use_community: true, proper async, no runtime hacks
• Pattern aggregation active: Observations auto-feed pattern aggregates after each scan
• No hardcoded assertions: Bootstrap via wiki import or Trust Packs
• Ephemeral mode (~0.25s), persistent mode with drift detection
• Observation/claim distinction (A1–A5 complete)
• aphoria verify run|map for claim verification
• 10 claims dogfooded in .aphoria/claims.toml
• Self-improving: LLM extraction → pattern learning → autonomous promotion → shadow testing → auto-rollback

Recently Completed: Corpus Infrastructure (Phase CC ✅)

Phase CC.1-CC.3: Removed hardcoded corpus, built emergent system (Feb 6-7)

• Deleted hardcoded.rs (369 lines, 19 assertions)
• Pattern aggregates stored in StemeDB: community://pattern/{BLAKE3(SPV)}
• Multi-tier promotion: 95%+ (Regulatory), 80%+ (Clinical), 50%+ (Emerging, review required)
• Wiki import: aphoria corpus import wiki ~/docs parses MUST/SHOULD patterns

Phase CC.6: Pattern Aggregation (Emergent Learning) (Feb 8) ✅

• Observations now automatically feed back into pattern aggregates
• Every scan with --persist --sync contributes to community learning
• Config: aggregation_enabled: true (default)
• Tracks project_count and observation_count per pattern
• Privacy-preserving: wildcarded subjects, project deduplication

Phase CC.7: Make Community Corpus Default (Feb 8) ✅

• Created AsyncCorpusBuilder trait for async-native corpus builders
• Refactored CommunityCorpusBuilder to implement AsyncCorpusBuilder
• Removed rt.block_on() hack that caused "runtime within runtime" errors
• Made entire corpus building chain properly async (16 functions updated)
• Enabled use_community: true by default in CorpusConfig
• All 1189 tests pass, no clippy warnings, no runtime errors

Philosophy: The corpus isn't written by experts. It's discovered by the community and validated by authorities.

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Phase 10: UX & Enterprise Polish (Partial)

10.1 Acknowledgment Expiry ✅ — archived

10.2 Human-Readable Signer Names ⬜

Impact: MEDIUM | Effort: MEDIUM | Priority: P2

Map issuer hex IDs to human-readable team names in output.

Task	Status
Add signer_name: Option<String> to PackHeader	⬜
Add contact: Option<String> to PackHeader (Slack channel, email)	⬜
Update policy export/import to preserve new fields	⬜
Show "Signed by Platform Security Team" instead of hex in output	⬜
Backward-compat: gracefully handle packs without new fields	⬜

10.3 Speed Benchmarks ⬜

Impact: LOW | Effort: LOW | Priority: P3

Task	Status
Create benchmarks/ directory with test corpora	⬜
Add aphoria scan --benchmark flag for self-test	⬜
Document test conditions in benchmark results	⬜

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Phase CC: Corpus Infrastructure (Community Corpus) ✅

Completed: 2026-02-08 | Removed hardcoded corpus, built emergent community-driven system

Philosophy

The corpus isn't written by experts. It's discovered by the community and validated by authorities. 95% adoption = "This is what the community does" = Authoritative.

CC.1 Delete Hardcoded Corpus ✅

Task	Status
Remove applications/aphoria/src/corpus/hardcoded.rs (369 lines)	✅
Remove include_hardcoded from CorpusConfig	✅
Remove from CorpusRegistry::with_defaults()	✅
Update tests to use community corpus	✅
Fix 5 pre-existing clippy errors in stemedb-api	✅

Implemented: Destructive pre-release approach - no deprecation warnings, just deleted.

CC.2 Community Corpus Builder ✅

Task	Status
Create applications/aphoria/src/corpus/community.rs (393 lines)	✅
Create applications/aphoria/src/corpus/thresholds.rs (230 lines)	✅
Create applications/aphoria/src/corpus/resolver.rs (220 lines)	✅
Create applications/aphoria/src/community/pattern_store.rs (332 lines)	✅
Implement PatternAggregateStore trait with StemeDB backend	✅
Multi-tier promotion: 95% (Regulatory), 80% (Clinical), 50% (Emerging)	✅
Content-addressed storage: community://pattern/{BLAKE3(SPV)}	✅
Config integration: use_community flag (opt-in)	✅
Full scan flow integration	✅

Storage Architecture:

• Pattern aggregates stored as StemeDB assertions (no TOML files)
• Predicate: pattern_aggregate with JSON metadata
• Deduplication via content-addressed subjects
• Privacy-preserving: wildcarded subjects, k-anonymity

CC.3 Wiki Import Bootstrap ✅

Task	Status
Create applications/aphoria/src/corpus/wiki_importer.rs (332 lines)	✅
Regex extraction of MUST/SHOULD patterns from markdown	✅
Authority source parsing (RFC, OWASP, CWE references)	✅
Smart subject normalization (TLS → tls/cert_verification)	✅
CLI command: aphoria corpus import wiki <path>	✅
PatternAggregator write path (stores to StemeDB)	✅
Integration tests with fixtures	✅ (6 tests)
Documentation: docs/bootstrap-corpus.md	✅

Usage:

# Create wiki with best practices
mkdir -p .aphoria/wiki
echo "TLS cert verification MUST be enabled. Authority: RFC 5246" > .aphoria/wiki/tls.md

# Import patterns
aphoria corpus import wiki .aphoria/wiki
# → Patterns now in StemeDB, available for conflict detection

CC.4 Trust Pack Bootstrap ⬜

Task	Status
Extend Trust Packs to include pattern aggregates	⬜ Future
aphoria trust-pack install <name> writes patterns to StemeDB	⬜ Future
Create rfc-owasp-baseline.toml with ~20 common patterns	⬜ Future

Status: Infrastructure exists, implementation deferred. Wiki import covers bootstrap needs.

CC.5 Skill-Driven Cold Start ⬜

Task	Status
Enhance aphoria-suggest skill with bootstrap mode	⬜ Future
Detect empty corpus during scan	⬜ Future
Analyze project structure (Cargo.toml, package.json)	⬜ Future
Suggest 3-5 baseline patterns based on detected stack	⬜ Future

Status: Skill exists, bootstrap mode not implemented. Manual wiki creation works well.

CC.6 Pattern Aggregation (Emergent Learning) ✅

Completed: 2026-02-08 | Observations now feed back into pattern aggregates automatically

Task	Status
Add aggregation_enabled config field (default: true)	✅
Implement aggregate_observations_to_patterns() in scanner	✅
Add StemeDBPatternStore::get_pattern_by_spv() for lookup	✅
Add StemeDBPatternStore::update_pattern() for updates	✅
Add compute_project_hash() for deduplication	✅
Hook into scan flow after observation recording	✅
Group observations by (subject, predicate, value)	✅
Wildcard project paths for anonymization	✅
Create or update PatternAggregate records	✅
Track project_count and observation_count	✅

Implementation:

// scanner.rs:344-357
if config.corpus.aggregation_enabled && should_persist_locally {
    let project_hash = compute_project_hash(project_root);
    aggregate_observations_to_patterns(&novel_claims, &episteme, &project_hash).await?;
}

Flow:

1. Scan extracts observations → recorded as Tier 4 assertions
2. Observations aggregated by (wildcarded_subject, predicate, value)
3. For each unique pattern:
   • If exists: increment observation_count, check new project → increment project_count
   • If new: create PatternAggregate with initial counts
4. Stored as assertions with predicate "pattern_aggregate"

Result: The corpus is now emergent. Every scan with --persist --sync feeds the learning loop.

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What Remains (Future Enhancement)

CC.4 Trust Pack Bootstrap ⬜ (Unchanged - Future enhancement)

CC.5 Skill-Driven Cold Start ⬜ (Unchanged - Future enhancement)

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CC.7 Make Community Corpus Default ✅

Completed: 2026-02-08 | Community corpus now enabled by default, async runtime issue resolved

Task	Status
Create AsyncCorpusBuilder trait for async corpus builders	✅
Implement dual registry (sync + async builders)	✅
Refactor CommunityCorpusBuilder to implement AsyncCorpusBuilder	✅
Remove rt.block_on() hack, use proper .await	✅
Make build_corpus_with_stores() async	✅
Make create_authoritative_corpus() async	✅
Make EphemeralDetector::new() async	✅
Make extract_claims_from_files() async	✅
Update all 16 function callers to use .await	✅
Change use_community: false → true in defaults	✅
Verify tests pass with community corpus enabled	✅ (1189 tests)

Architecture Improvement:

• Before: Sync CorpusBuilder trait forced async operations to use rt.block_on(), causing runtime errors in async contexts
• After: Dual-trait approach (CorpusBuilder + AsyncCorpusBuilder) allows sync builders (RFC, OWASP, Vendor) to stay simple while community builder uses proper async
• Result: No block_on() hacks anywhere, proper async/await throughout

Verification:

RUST_LOG=aphoria=debug aphoria scan --persist --sync .
# Logs show:
# ✅ "Registered community corpus builder (async)"
# ✅ "Building corpus (async)" for Community builder
# ✅ "Querying popular patterns from StemeDB"
# ✅ No "Cannot start a runtime from within a runtime" errors

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CC.4 Trust Pack System (Bootstrap Option 2) ⬜

Task	Status
aphoria trust-pack export --source community	⬜
aphoria trust-pack install <name>	⬜
Create rfc-owasp-bootstrap Trust Pack from old hardcoded corpus	⬜
Trust Pack validation and signing	⬜
Trust Pack registry/sharing mechanism	⬜

Usage:

aphoria trust-pack install rfc-owasp-bootstrap
# Installs 19 baseline assertions for new projects

CC.5 Corpus Management CLI ⬜

Task	Status
aphoria corpus build - Build community corpus	⬜
aphoria corpus list - Show loaded corpus assertions	⬜
aphoria corpus candidates --min-adoption 0.50 - List promotion candidates	⬜
aphoria corpus promote <pattern-id> - Manual promotion	⬜
Update aphoria-corpus-curator skill for manual review	⬜

CC.6 Multi-Layer Corpus Resolver ⬜

Task	Status
Create applications/aphoria/src/corpus/resolver.rs	⬜
Priority layers: Manual overrides > Trust Packs > Community > (deprecated hardcoded)	⬜
Conflict resolution: higher priority overwrites lower	⬜
Config: use_community = true default	⬜
Config: include_hardcoded = false default (post-migration)	⬜

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Phase 14: Governance Workflows 🎯

Vision: Clear approval paths for pattern promotion with audit trails.

14.1 Approval Workflow Definition ⬜

Task	Status
Create src/governance/mod.rs module	⬜
Define ApprovalWorkflow struct	⬜
Define ApprovalStage with required approvers	⬜
Support evidence-based auto-approve thresholds	⬜
Config: define workflows in .aphoria.toml	⬜

14.2 Approval State Machine ⬜

Task	Status
Implement state transitions (pending → approved/rejected)	⬜
Multi-stage approval support	⬜
Timeout and escalation policies	⬜
Store approval history with timestamps	⬜

14.3 Approval CLI ⬜

Task	Status
aphoria governance pending — list pending approvals	⬜
aphoria governance approve <id> --comment "..."	⬜
aphoria governance reject <id> --reason "..."	⬜
aphoria governance escalate <id>	⬜
Show approval status in pattern list	⬜

14.4 SOC 2 Audit Trail ⬜

Task	Status
Full audit log for all governance actions	⬜
aphoria audit trail --pattern <id> — show timeline	⬜
Export governance history for auditors	⬜
Include approver identity and timestamp	⬜

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Phase 15: Evidence Source Integration ⬜

Vision: ADRs, specs, and standards automatically link to patterns.

15.1 ADR Auto-Detection ⬜

Task	Status
Create src/evidence/adr.rs	⬜
Detect ADR-XXX patterns in commit messages	⬜
Scan for ADR files in standard locations	⬜
Parse ADR content for related patterns	⬜
Link ADR to patterns automatically	⬜

15.2 Spec File Detection ⬜

Task	Status
Create src/evidence/spec.rs	⬜
Detect spec files (specs/*.md, *.spec.md)	⬜
Parse requirement IDs (REQ-XXX)	⬜
Link requirements to patterns	⬜
Show requirement coverage in reports	⬜

15.3 Standard Reference Extraction ⬜

Task	Status
Parse RFC references (RFC 7519)	⬜
Parse OWASP references (OWASP A03:2021)	⬜
Parse NIST references (NIST SP 800-53)	⬜
Auto-link to authoritative corpus	⬜

15.4 Evidence Display ⬜

Task	Status
Show full evidence chain in pattern output	⬜
aphoria patterns --by-evidence grouping	⬜

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Phase A6: AST-Aware Observation & Claim Verification ⬜

Evolved from the "Scout & Judge" proposal (2026-02-05). The original focused on LLM cost reduction via AST snippet extraction. Reframed through the observations/claims distinction: the Scout produces structurally richer observations that regex can't, and the Judge verifies authored claims against code rather than classifying security issues.

Why This Matters

The 42 regex extractors work well for direct pattern matching (~0.25s). But they can't follow indirection:

# Regex sees `requests.get(url, verify=should_verify)` — no match
# AST sees `should_verify = False` in scope — match
should_verify = False
requests.get(url, verify=should_verify)

And they can't verify authored claims. When a claim says "Wallet MUST NOT derive Clone", regex can find #[derive( but can't determine scope or negation semantics. An AST-aware scout + LLM judge can.

A6.1 Tree-sitter Infrastructure ⬜

Task	Status
Add tree-sitter + language grammars to Cargo.toml	⬜
Create src/scout/mod.rs module	⬜
src/scout/engine.rs — parse files, run SCM queries	⬜
CandidateSnippet type with structural context	⬜
src/scout/queries/ — .scm query files per category/language	⬜
Language support: Python, Go, Rust, JavaScript/TypeScript	⬜

pub struct CandidateSnippet {
    pub file_path: String,
    pub language: Language,
    pub start_line: usize,
    pub end_line: usize,
    pub code: String,
    pub context_variables: HashMap<String, String>,
    pub query_id: String,
}

A6.2 Scout as Observation Producer ⬜

AST-aware ROI detection for patterns regex can't follow.

Task	Status
Variable indirection tracking (assign → use across lines)	⬜
Context expansion: function scope, variable defs, comments	⬜
Deduplication with existing regex extractors	⬜
SCM queries for TLS, secrets, auth, crypto categories	⬜
Integration: run scout after regex, drop overlaps, combine	⬜

Key design: Scout runs alongside (not instead of) regex extractors. Regex handles 90% at zero cost; scout handles the indirection cases regex misses.

A6.3 Judge as Claim Verifier ⬜

LLM receives focused snippet + authored claim → structured verdict.

Task	Status
Refactor LlmExtractor to accept CandidateSnippet + AuthoredClaim	⬜
Verification prompt: "Does this code satisfy this claim?"	⬜
Structured output: `{ verdict: PASS	FAIL
Wire into aphoria verify Direction 2 (walk claims, verify in code)	⬜
Maps to Extractor::verify() from vision-gaps	⬜

Token efficiency: Snippet (~100 tokens) vs whole file (~2000 tokens) = 95% cost reduction per verification.

A6.4 Scout for Claim Suggestion ⬜

Scout identifies ROIs without matching authored claims, feeds context to aphoria-suggest.

Task	Status
Identify ROIs with no matching claim in .aphoria/claims.toml	⬜
Enrich context for skill: snippet + function name + surrounding comments	⬜
Feed to aphoria-suggest skill for claim drafting	⬜

A6.5 Evaluation ⬜

Task	Status
Scout recall: "Did scout find the vulnerable line in fixture?"	⬜
Judge precision: "Given snippet + claim, did LLM classify correctly?"	⬜
Cost metric: tokens_per_verification vs monolithic approach	⬜
Parallel run: shadow mode alongside regex for tuning	⬜

Phase A6 Priority

Lower priority than A5 flywheel completion and Phase 14 governance. Build when:

1. Regex extractors hit limits on specific indirection patterns
2. aphoria verify Direction 2 needs LLM-backed verification
3. aphoria-suggest needs richer context than regex observations provide

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Enterprise Pilot Success Metrics

90-Day Pilot Targets

Metric	Target	Measurement
Patterns captured	100+ observations	Count in knowledge graph
Patterns promoted	10+ conventions	Count with status=Active
Cross-team adoption	2+ teams connected	Unique team_ids
New hire guidance events	5+ accepted suggestions	Accept rate tracking
False positive rate	<10%	FP feedback / total flags
Evidence-backed patterns	>50%	Patterns with Research+ evidence

180-Day Production Targets

Metric	Target	Measurement
Knowledge retention	0 lost patterns on departures	Audit log
Onboarding velocity	50% faster ramp	Time to first PR
Convention adoption	80% across org	Compliance rate
SOC 2 evidence	Audit pass	External validation
Deprecated pattern migration	90% complete by sunset	Migration tracking

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Enterprise Simulation UAT

See: uat/enterprise-simulation-uat.md